Prodigiosinella confusarubida ATCC 39006: Ser39006_001795
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Entry
Ser39006_001795 CDS
T05290
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ser39006_001795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_001795
Enzymes [BR:
sera01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Ser39006_001795
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Ser39006_001795
DNA repair and recombination proteins [BR:
sera03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ser39006_001795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AUH02981
UniProt:
A0A2I5T254
LinkDB
All DBs
Position
385805..386614
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AA seq
269 aa
AA seq
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MPELPEVETSRRGISPYLVGHTILYAEVRNTRLRWPVSPEILSLSDKQVLSVQRRAKYLL
IELDSGWMIVHLGMSGSLRVLPEYTEPGKHDHVDLVMDSGKVLRYTDPRRFGAWLWSNDP
ENSSVLAHLGPEPLSDDFSGDYLLTKSRGKKTPVKLWIMDNKQVVGVGNIYASESLFSAG
ILPDRPVGSLTENEAHLLVTMIKNVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRA
GEPCRHCGTPIETTRQGQRSTFFCRRCQQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgccagaggttgaaaccagtcgtcggggaatttccccctatcttgtcggt
cataccattctctatgcggaagtacgtaatacccgcctgcgctggcctgtttccccggaa
attctgtcgctgagtgataaacaggtactaagtgtacagcgccgtgccaaatatctgctg
attgaactcgacagtggctggatgattgtgcatctcggtatgtccggcagcctgcgagtc
ttaccagaatataccgagcctggtaagcacgaccatgtcgacctggttatggatagcggt
aaggtattgcgctatacagaccctcgacgttttggcgcctggctgtggagcaatgacccg
gaaaacagttcagtgctggcacatctggggcccgagccattaagcgacgatttttccggc
gattacctgcttacaaaatcccgcgggaagaaaacgcccgtcaaactatggattatggat
aataaacaggtagtaggtgtgggtaatatctacgccagtgaatccctgttcagcgcgggt
attttacctgacagaccggtaggctcactgacagaaaatgaagcccatttgctggtaacg
atgatcaagaatgtattgcagcgatccattgagcaaggtggcactacgctgcgagacttt
cttcaatcggatggtaagccgggctattttgctcaggaattgcaagtttacggccgcgcc
ggagagccttgccgacattgtggtacgccgatagaaaccacccgacaaggacaacgcagc
accttcttctgtcgtcgttgtcagcaataa
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