Prodigiosinella confusarubida ATCC 39006: Ser39006_002560
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Entry
Ser39006_002560 CDS
T05290
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K22994
pectate disaccharide-lyase [EC:
4.2.2.9
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00040
Pentose and glucuronate interconversions
sera01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Ser39006_002560
Enzymes [BR:
sera01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.9 pectate disaccharide-lyase
Ser39006_002560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pel9A-like_beta_helix
DUF3781
Motif
Other DBs
NCBI-ProteinID:
AUH03112
UniProt:
A0A2I5T2J3
LinkDB
All DBs
Position
complement(556396..558609)
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AA seq
737 aa
AA seq
DB search
MKYAVSGLITVALNSFLLMGSTPSFAAPQTAPLVWHSIAFGQSTDVNFSSNVLPEKIGVN
DVTINGKKLTSTDKADLSAPITIESRGGKIANTHDGLTFFYTELPANVNFTLQSDVTVDQ
FGPETKARPAAQEGAGILVRDILGVPRQNPLKVGYEEFPAASNMVMNAIMTQDKKAKNAK
TEVKIQAISRNGVIQPWGNIGAKISKSSYQEKINLEQTPTFRLKLERTDDGFITSYAPKD
SDQWVTKTVKGADLVTQQDKKHYYVGFFASRNAKVTINNASLTTSPAHTKLSPAFKAESF
APLLQVASSTLSVHDNYLVQARVNYNGTLAVYQNGKELGKAHAIKAGEMFSLPAKLTAPK
TEFKLVYTPGEGKDKSSQEASFSVEKVTFADAKNLYVSPEGKSTNNGSKKAPLDITTAIS
ALPAGGTLWLMPGDYAATEIPVTASGTAKAPKHLIAVEGKSVIHGLNLNASYWIVKGVEI
TEKSFRIEGSYNRIDRVVAHNCDDTGIQVSSTGKVGKPLWASHNLILNSESYSNQDPGKI
NADGFAVKMRVGEGNVIRGAFSHDNIDDGFDLFNKIEDGPNGVVVIENSIALNNTSNGFK
LGGEGQPVAHQIKNSIAIGNHLDGFTDNFNPGALVVENNIALDNQRFNFIFRPSPYYGPE
KQGIFKNNVSLRTSAGKYDDAVVGRVDASNYFIKDNHSVNNKGKEITTAAYKSIVVPQTF
TCDAKGNLQLGDFLKKK
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgctgtttccgggctcattactgtagcccttaattcatttttattgatgggg
agtacgccttcttttgctgctcctcagacagcaccactggtctggcacagcatcgcattc
gggcagtccactgatgtgaatttctcctccaacgttttacctgaaaaaatcggggttaat
gacgttaccatcaacggcaaaaaacttacttcaacagataaagccgatttatccgcgcca
attaccattgaaagtcggggtggaaaaatagccaacacccatgatggattaacgtttttc
tatactgaactaccagccaatgtaaatttcacgctgcaatctgacgttacggttgatcag
tttggtcctgagacaaaggccagaccagctgcacaggaaggtgcagggatactagtacgg
gatattttaggtgtgcctcggcagaatccactgaaagtgggatatgaggagtttccggca
gcctcaaacatggtgatgaatgccatcatgacccaggataaaaaggccaaaaatgccaaa
actgaagtaaaaatacaggctatttcacgtaatggcgtgatacagccgtggggtaatatt
ggcgctaaaattagcaaaagtagctatcaggaaaaaattaatctggaacaaaccccaaca
ttccgcctgaaactggaacggactgacgatggctttatcacttcttatgcacctaaagac
agtgatcaatgggtaacaaaaaccgtcaaaggtgctgatctggtcacccaacaggataaa
aagcattactatgtcggtttcttcgcctcacgtaatgcaaaagtcaccattaataatgcc
agcctgaccaccagtccagcgcatacaaaattatcacccgcctttaaagcagaaagtttc
gcaccattgttgcaagtggcttcttcaaccctttccgttcacgacaactatctggtccag
gccagagtgaactacaacggtacactggccgtgtatcagaatggcaaggagcttggcaaa
gcacacgctatcaaagccggtgaaatgttcagcctgccagcgaagctgacagcgccgaaa
acagagttcaaactggtctacacaccaggtgaaggtaaagataaatcatcacaggaagcg
agtttcagtgtagaaaaagtgacctttgcagatgccaaaaatttgtatgtttctcctgag
gggaaatcaaccaacaatggtagcaaaaaagcaccactggatatcacgacagccatcagt
gcattacctgcgggcggtacgttgtggttaatgcctggggattacgctgcgaccgaaatt
ccggtaaccgccagcggtaccgccaaagcgccaaaacatctgattgcagttgaaggtaag
agcgttatccatggactcaatctcaacgctagctactggattgtaaaaggtgttgaaatt
actgagaaaagcttccgtatcgaaggcagttacaaccgcatagatcgcgtggtggcacac
aattgcgacgacaccggaattcaggtttcatcaacaggaaaggtgggaaaacctttgtgg
gccagccataacctgattttgaattcagaatcctacagcaatcaggatccaggtaaaatc
aacgcggatggctttgcagtaaaaatgcgcgttggtgaaggtaatgtgatccgtggtgcc
ttctctcatgacaatattgatgatgggtttgacctgttcaacaaaattgaggatggtccg
aacggggttgtggtgatcgagaattctattgcactcaacaacaccagcaacggtttcaaa
ctgggaggggaaggtcagccggttgcacatcagattaaaaacagcattgccattggcaat
catctggatggttttaccgacaactttaacccaggtgcgctagttgttgagaataacatt
gcacttgataatcaacgctttaactttatcttccgcccaagcccgtactatggtccggaa
aaacagggaatatttaaaaataatgtatccctgcgcacgtcagcgggtaaatacgacgac
gccgtcgttggtcgtgtagatgccagtaactacttcatcaaagacaaccactcggtcaac
aataaagggaaagaaatcactactgccgcctataaatccattgtcgtaccacaaacattc
acgtgtgatgcaaaaggcaatttacagctgggtgattttctgaagaaaaaataa
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