Prodigiosinella confusarubida ATCC 39006: Ser39006_003795
Help
Entry
Ser39006_003795 CDS
T05290
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ser39006_003795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_003795
Enzymes [BR:
sera01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ser39006_003795
Messenger RNA biogenesis [BR:
sera03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ser39006_003795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUH03331
UniProt:
A0A2I5T368
LinkDB
All DBs
Position
complement(826450..827742)
Genome browser
AA seq
430 aa
AA seq
DB search
MSKTYLTEQKFSDFALHPMVIEALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPASAERQTNQPRALIMAPTRELAVQIHSDAEALARITGLKLGLAYG
GDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHISLGAIQVIVLDEADRMYDLGFIKDIR
WLFRRMPPVNQRLNMLFSATLSYRVRELAFEQMNNAEYIEIEPEQKTGYRITEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFSNTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTHGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLA
CEEYALNLTAIESYIGHHIPVSKYDSDALLTDLPAPKRLTRPRSNSGPRRHNSPRRSGAG
APRNNRKRAS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacatacttaactgaacagaagttttccgacttcgcactgcacccgatggtt
atcgaagcacttgaaagtaaagggtttcataactgcacacccatccaggctttggctctg
ccattgaccttgtcagggcgtgatgtagcgggacaagcgcaaaccggtacgggcaagacg
ctggcttttttagcgtctactttccattatctgctttctcaccccgcctcagctgaacgt
cagaccaaccagccacgggctttgattatggcccccacacgtgaactggcggtacaaatc
cattccgatgcggaagcacttgcgcgcattaccggattgaaattaggcctggcctatggt
ggcgatggttatgacaaacaactgaaagtgctagaaaacggggtagatatcctggtcggt
actacgggccgcctgatcgattatgccaagcagaaccatatcagcctgggcgcgattcag
gttatcgtactggatgaggctgatcgtatgtacgatctaggcttcatcaaggatatccgc
tggctgttccgccggatgccacccgtaaatcagcgtttaaacatgctgttctccgccacg
ctatcctatcgcgtgcgtgaattagcgttcgaacagatgaacaatgcggaatacatagaa
atcgaaccggagcaaaaaaccggttatcgcattacagaagagctattttatccttctaac
gaagaaaaaatgcggttgttacagacactgattgaggaagagtggcctgatcgctgtatt
attttttccaataccaagcaccgttgtgaagacatctggggtcacctcgctgccgacggg
catcgtgtcgggttgctaaccggagatgtagcacagaaaaaacgactgcgtatcctggat
gatttcacccatggcaatttggatattctggtcgccaccgatgttgctgcccgtggcctg
catatccccgccgttacccacgtattcaactatgatctgccggatgactgtgaagactat
gtccaccgcattggtcgtacaggtcgcgctggtgccagtggttactcaataagcctggct
tgcgaagaatacgcactgaatcttactgctattgaaagctatattggacaccatattcct
gtcagcaagtatgacagtgatgcattattgaccgacttacccgcaccgaagcggctgact
cgtccgcgttccaatagcggccctcgtcggcacaattcgccgcgtcgtagcggagccgga
gcaccacgtaacaaccgtaaacgagcgagctga
DBGET
integrated database retrieval system
