Prodigiosinella confusarubida ATCC 39006: Ser39006_004085
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Entry
Ser39006_004085 CDS
T05290
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00300
Lysine biosynthesis
sera00470
D-Amino acid metabolism
sera01100
Metabolic pathways
sera01110
Biosynthesis of secondary metabolites
sera01120
Microbial metabolism in diverse environments
sera01230
Biosynthesis of amino acids
Module
sera_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Ser39006_004085
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Ser39006_004085
Enzymes [BR:
sera01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Ser39006_004085
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
AAA_2
Motif
Other DBs
NCBI-ProteinID:
AUH03384
UniProt:
A0A2I5TFN3
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All DBs
Position
885960..886784
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AA seq
274 aa
AA seq
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MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY
RIFNADGSEVTQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTDDELVRVNMGE
PNFEPQQVPFRAVKAEKTYIMRAEEHTVLCGVVSMGNPHCVIQVDDVDTAKVDVLGPLLE
SHERFPERANIGFMQVVDDHTIRLRVYERGVGETQACGSGACGAVAVGIQQGLLADNVKV
KLTGGELDINWAGPGKPLFMTGPATHVYDGSIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcgccaaaatgcacggtttgggcaatgactttatggttgttgatgccgttacg
cagaatgtctatttttcacctgagttgattcgacgtttgtcggatcggcattgtggtgtt
ggctttgatcaactgctggtggttgagccaccttacgatcctgaactggattttcattac
cgtattttcaatgcagatggtagtgaagtgactcagtgtggtaatggtgcccgttgtttt
gcccgatttgtgcgtcttaagggattaaccaacaaacgagatatcagtgtcagcacccag
actgggcgtatgattctgagcgttacggatgatgaactggtgcgagtcaatatgggtgaa
cccaattttgagccgcagcaggtccctttccgcgcagttaaagcggaaaaaacgtatatt
atgcgagcagaagaacataccgtactgtgtggtgtagtttcgatggggaatccccattgt
gtgatacaggtggatgatgtggatactgcgaaggtcgatgtgttgggaccgctgctggag
agccatgagcgttttccggaacgtgccaacattgggtttatgcaggttgtggatgaccac
actatccgattgcgtgtctatgaacgcggggtgggagaaactcaagcttgcggtagtgga
gcctgtggggctgttgcggtaggtattcagcaagggctgctggccgacaatgttaaggtt
aaattgactggcggtgagcttgatattaactgggcaggtccaggtaagccgttatttatg
accgggccagctacgcacgtttacgatgggtccattcatttatga
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