Prodigiosinella confusarubida ATCC 39006: Ser39006_004105
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Entry
Ser39006_004105 CDS
T05290
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03420
Nucleotide excision repair
sera03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ser39006_004105
03430 Mismatch repair
Ser39006_004105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_004105
Enzymes [BR:
sera01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ser39006_004105
DNA repair and recombination proteins [BR:
sera03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ser39006_004105
MMR (mismatch excision repair)
Other MMR factors
Ser39006_004105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
AUH03388
UniProt:
A0A2I5TFQ6
LinkDB
All DBs
Position
889194..891356
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNDKQRDAVAAPRHNVLVLAGAGSGKTRVLVHRIAWLLTVENSSPYSILAV
TFTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQL
RLLKRLIKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEQTWQRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFHNILVDEFQDTNSIQYAWIRLLAGDS
ANVMIVGDDDQSIYGWRGAQVENIQHFLRDFPNVETIRLEQNYRSTSNILNAANALIAHN
GDRLGKNLWTDGVEGELISLYCAFNELDEARFVVNRIKVWQEAGGSLTENAILYRSNAQS
RVLEEALIQQNLPYRIYGGMRFFERQEIKDALSYLRLIANRNDDSAFERVVNTPTRGIGD
RTLDVVRHTARDRQITMWQASRVLLQEKALAGRAASALQRFLELVDALAYETAELPLHVQ
TDRAIKDSGLWNMYEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAAL
EAGDGQADAHQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFVGELPAECVEEVRLRASVSRPVNHQRLG
TPVSQSDSGFTLGQRVRHAKFGEGTIVNLEGSGEHCRIQVAFPGQGIKWLVAAYARLDAI
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctctgacctgcttgatagtttgaatgataaacaacgcgatgcggtagctgct
ccgcgccataatgtgctggtgctggctggcgcgggcagtggtaaaacacgagtcctggta
caccgtatcgcctggctcctgacggtagaaaacagctcaccatactccattctggccgtc
acctttaccaacaaagcggcggccgagatgcgccaccgtattgatcagcttatcggcacc
agtcaaggtgggatgtggatcggcacttttcatggtttggcgcatcgcttgttacgggct
catcatctggatgccaatttgccgcaggactttcagatcctcgatagtgaagatcaactg
cgtttgctcaagcgtttgatcaaagcgctgaacctggatgagaaacagtggccgccacgg
caggccatgtggtacatcaacgggaaaaaggatgaggggctgcgtcctcagcacatcgaa
agctatggcaacccggtagagcaaacctggcagcgaatttatcaggcttatcaggaagcg
tgcgatcgcgccggtctggtagatttcgccgaactgttgttacgggcccacgaactatgg
ctgaacaagccacatattttgcagcattatcgcgagcgctttcacaatattctggtggat
gagtttcaggataccaatagtattcagtacgcttggatccgtctgctggcgggcgatagc
gccaatgtgatgattgttggtgatgatgatcagtccatttatggctggcgaggcgctcag
gtcgaaaacatccagcatttcctgcgcgactttcccaatgttgaaactattcgtctggag
cagaattaccgctctaccagcaacatcctcaatgcagcgaacgcgttaatcgcccataac
ggtgatcgtctggggaaaaacttgtggactgacggtgtcgagggggaactgatctccctc
tattgcgcgtttaacgaactagatgaagcccggtttgtggttaatcgcatcaaagtgtgg
caggaagccggcggttcgttaaccgagaacgccattctttaccgcagtaatgcccagtca
cgtgtactggaagaggcgttgattcaacagaatctgccttaccgtatttatggtggtatg
cgcttttttgaacgacaggaaatcaaggacgcgttgtcttatctgcgtttgattgccaac
cgtaatgatgactccgcctttgagcgtgtagtgaatacgccgacgcgtggtattggcgac
cgtacgctggatgtggtgcgtcatacggcgcgtgaccgtcagatcacaatgtggcaggct
agtcgtgttctgttgcaagagaaagccttggcgggccgcgcggcttctgcattacagcgt
tttctggagttggtggatgcgctggcctatgaaacagccgaattaccattgcatgttcag
acagaccgggccatcaaggattccggattgtggaatatgtatgagcaggaaaaaggtgag
aagggtcaggcgcgggtagaaaacctggaagagctggtgacagcaacgcgccaattcagc
tatcaggaagaagatcaggatttgatgccgttacaggcatttctttcacatgcggcactg
gaagcgggtgatggacaagctgatgcgcaccaggatgcggtgcagcttatgacgttgcat
tctgccaaaggtctggagtttccgcaggtattcattgttggcatggaagagggtatgttc
cccagccagatgtcgctggatgaaggtggacgtcttgaggaagaacgacgcctggcatat
gtcggtgtgactcgagccatgcagaagttgaccctcacttatgcggaaacccggcgttta
tacgggaaagaagtgtatcaccgcccatcgcgttttgttggtgaactgccagcggagtgt
gtggaggaggtgcggttacgagccagtgtgtcgcgcccggtcaaccatcagcgactggga
accccggtcagtcagagtgacagcggcttcacattggggcagcgtgtgcgtcatgccaaa
ttcggtgaagggactatcgtcaatctggaaggaagcggcgaacattgccggattcaggtg
gcgtttccagggcaaggcatcaaatggctggtcgccgcttatgctcgtttggacgcgata
taa
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