Prodigiosinella confusarubida ATCC 39006: Ser39006_005255
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Entry
Ser39006_005255 CDS
T05290
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Ser39006_005255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_005255
03009 Ribosome biogenesis [BR:
sera03009
]
Ser39006_005255
Messenger RNA biogenesis [BR:
sera03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ser39006_005255
Ribosome biogenesis [BR:
sera03009
]
Eukaryotic type
Pre-60S particles
RNases
Ser39006_005255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AUH03591
UniProt:
A0A2I5TG93
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All DBs
Position
1123712..1124254
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AA seq
180 aa
AA seq
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MVDENRLIWIDLEMTGLDPERDHIIEIATLVTDANLNVLAEGPTLAVHQPDSQLALMDDW
NVRTHTGSGLVERVKASQFSERAAELETLKFLQQWVPAGKSPICGNSVGQDRRFLFRYMP
ELEAYFHYRYLDVSTLKELAIRWKPEILTGFTKRNTHQALDDIRESVAELAYYREHFIQL
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgaaaacagactgatctggatcgatcttgaaatgacgggactggatcccgag
cgtgaccacatcattgaaatcgccacgctggtgaccgatgccaatctgaatgtgctggcg
gaagggccaacactggcggtacatcaaccagatagccaactggcgttgatggatgactgg
aatgttcgtactcatactggcagcggactggttgagcgggtgaaggccagccagtttagt
gaacgcgccgctgagctggaaacgttgaaatttctgcaacagtgggtcccggcaggaaaa
tcaccaatttgtggcaacagcgtcggacaggatcgtcgttttttattccgctatatgcct
gagctggaagcctattttcactatcggtatctggatgtcagcacgctgaaagagttggcg
atccgctggaagccggaaattctaaccggattcacgaagcgtaatacgcatcaggcgttg
gatgatattcgtgagtcggtggctgagctggcctactatcgtgagcattttatccagctc
tga
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