Prodigiosinella confusarubida ATCC 39006: Ser39006_007360
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Entry
Ser39006_007360 CDS
T05290
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sera03016
]
Ser39006_007360
Enzymes [BR:
sera01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Ser39006_007360
Transfer RNA biogenesis [BR:
sera03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Ser39006_007360
Prokaryotic type
Ser39006_007360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AUH06759
UniProt:
A0A2I5TQC1
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All DBs
Position
1605119..1606147
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AA seq
342 aa
AA seq
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MNTADELTWLHGKPQSTGMMKSTADDFIVVEDLGFQPDGEGEHLLVRIRKRGCNTVFVAE
ALAKFAHIPARAVSYAGLKDRHAVTEQWFCLHLPGKETPDLQAFELEGCELLEAARHRRK
LRIGALQGNTFTLVLRHISDRQSVEDRLQRITTAGVPNYFGSQRFGREGNNLDQARRWAS
NDILVKERSKRSFYLSASRSELFNCVTSARLAQQQEKVVFCGDALQLTGRGSWFVAQKDE
LTALQQRVEQGTLQITAPLPGDGALGTQDAALDFEQQCLQTQPLLLSLLQRERVEPARRA
VLLYPRELQWEWQDKMTVQLRFWLPAGSFATSVVREIVLQAQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgccgatgagcttacctggttgcatggaaaaccacagtcaacagggatgatg
aaatccactgctgacgattttattgtggtcgaggatctcggtttccaaccagatggcgaa
ggcgaacatctgttggtacgaatacgcaaacggggatgtaatactgtatttgtggctgaa
gcgctggcaaagtttgctcatattcctgcgcgtgctgtcagttatgccggtcttaaggat
cgtcatgcggttactgaacaatggttttgtctccatttaccaggaaaagaaactccggat
ctgcaggcatttgaactggaaggatgtgagcttcttgaggctgctcgacaccgtcgtaaa
ctgcgtataggcgcgctgcaaggcaatacctttacgctggtattgcgtcacatcagcgat
cgacaatcggtagaagatcgtttgcaacgtattactactgctggcgtgcctaattatttc
ggtagtcagcggtttggccgcgagggcaataaccttgatcaggcccggcgttgggcgagt
aatgacattctggtgaaagaacgtagtaaacgcagcttttatctttctgccagccgtagt
gaactctttaactgtgttaccagcgcccgcttggcgcagcaacaggaaaaagtggtcttt
tgcggtgatgctttacaattgacgggtcgaggcagttggtttgtggcgcagaaggatgag
ctaactgctctacagcagcgtgtcgaacagggcacattacagattacggcgccattgcct
ggcgatggtgcgttaggtacgcaagatgcggctctggactttgagcaacagtgtctgcag
acacaaccattgctgctgtcattactacagcgtgagcgggtagagcccgctcgtcgtgcc
gttttactttatcctcgggaattgcagtgggaatggcaggataagatgacggttcaatta
cgcttttggcttccagcgggaagttttgccaccagcgtagtaagggaaattgtgctacag
gcacagtag
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