Prodigiosinella confusarubida ATCC 39006: Ser39006_008835
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Entry
Ser39006_008835 CDS
T05290
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sera03009
]
Ser39006_008835
Enzymes [BR:
sera01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ser39006_008835
Ribosome biogenesis [BR:
sera03009
]
Prokaryotic type
rRNA helicases
Ser39006_008835
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUH04214
UniProt:
A0A2I5T5Q3
LinkDB
All DBs
Position
complement(1893578..1894903)
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AA seq
441 aa
AA seq
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MTATNFSEFDLDESLLDALRDIGFQRPTAIQAAAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARLLAAHTHLDIATITGGVAYMNHA
EVFSENQDLVVATTGRLLQYIKEENFDCRAVETLILDEADRMLELGFAQDIEHIAGETRW
RKQTLLFSATLEGDAIQDFAERLLNDPIEIESDPSRRERKKILQWYYRADDLEHKTALLR
HLLKQPDVTRSIVFVRKRERVHELVGWLHAAGIQSCYLEGEMVQAKRNEAIKRLSEGRVN
VLVATDIAARGIDINDISHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISLVEAHDHLLL
GKISRYLNEPLKPRVVDELRPSTRAPNDNVTGKPSKKVLTKRKEQKEKDKQKVKVKIRHR
DSKNVGKRRQPADKMEKPTES
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaccaatttttccgagtttgatcttgacgaaagcctgcttgatgccttgcgt
gacataggctttcagcgcccgacagcaattcaggctgccgctattcccccagcgatggaa
gggcgagatgtactgggctccgcaccaacaggtacagggaagaccgctgcctatctgttg
ccggttctacagcatctactcgattttccacggaaaaaatcaggaccgcctcgggttcta
attctgacgccaacccgtgagctggcgatgcaggttgctgaccaggctcgcctgctggct
gcgcacacgcatctggatatagccactatcactggtggcgtcgcctatatgaaccacgcc
gaagtgtttagtgaaaatcaggatctcgtggttgcgaccaccgggcgattgttgcaatac
attaaagaagaaaattttgactgccgggcagtcgaaacgctgatcctggatgaagctgat
cgcatgctggaactgggctttgcacaggatatcgagcacatcgccggtgaaacacgctgg
cgcaagcaaacactgctgttctcggccacactggaaggcgacgccattcaggattttgcc
gaacgcctgctgaatgatccgatagaaatagagtccgatccttcacgccgggaacgtaaa
aagattctgcaatggtactaccgtgccgatgatcttgaacacaaaaccgccctgttacgc
cacttattgaaacaaccggatgtcactcgttctattgtgtttgtgcgcaaacgtgaacgt
gtccatgagctggttggatggttgcatgcagccggcattcagtcctgttatctggaaggc
gagatggtccaggccaaaagaaacgaggctatcaagcgcttaagcgaggggcgggtaaat
gtactggttgcaactgacattgctgctcgaggcatcgatattaacgatatcagccatgta
tttaacttcgatttaccacgcaccgcagatacctatctacaccgtattggccgaactggc
cgtgcaggtcgcaaaggatgtgcaatatcgctggttgaagcccacgatcacctgctgctg
gggaaaattagtcgttatctgaatgaaccgttaaagcctcgcgtggtggatgaactacgt
cccagcacacgggcaccaaacgacaacgtgaccggaaagccatccaagaaagtgttgacc
aaacgcaaagaacagaaagagaaagataaacagaaagtaaaggtgaaaattcgtcaccgc
gatagtaaaaatgttggtaaacgtcgtcagcccgctgacaagatggaaaaaccgactgaa
agttga
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