Prodigiosinella confusarubida ATCC 39006: Ser39006_011965
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Entry
Ser39006_011965 CDS
T05290
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sera01002
]
Ser39006_011965
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sera01011
]
Ser39006_011965
Peptidases and inhibitors [BR:
sera01002
]
Cysteine peptidases
Family C82
Ser39006_011965
Peptidoglycan biosynthesis and degradation proteins [BR:
sera01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Ser39006_011965
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AUH04778
UniProt:
A0A2I5T7B9
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All DBs
Position
2627620..2629320
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AA seq
566 aa
AA seq
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MLLTRQKTQRLFCSAISALLLGSVFYPFIVQAASPTTTIGRTAAPVDISSQARRMALMSA
LPANISPHYLSELTTLYTRHAMQPMWSDHRAVREFQQQLAEVALSGVQPQFTTWVRWLTD
ARLTGFARDVVLSDAMLGYMQFVSGVEKKGNDWLYSKVSYPLAMPPAVMINQWQQAISAG
SEALYIATLIPHHSQYAKMHQALKNMLLDNRPWPKLVLSGTLRPGDYSTDLPALREILQR
TGMLTSVTSSISHDESSSSVQPSVNVYDGELVEAVKRFQQWQGLQEDGVIGRRTRDWLNV
SSQMRARLLALNIQRLRLVPDNVNTGIMVNIPNYSLIYYHNGAEVLSSRVIVGQPKRKTP
QMSSLLNDVVMNPPWNVPTKLVRQDIIPKVIQDPGYLQRHDYVVLSDWGRDAQIIDPSMI
DWPLVSAMNFPYRLRQSPGAKNSLGRYKFNMPNSDAIYLHDTPNHNLFQKDIRALSSGCV
RINKASELAALLLQDAGWNNARISSTIDRGNTIYVPIRQRIPVNLYYLTAWVADNGKPQF
RTDIYNYDGMVRTNAQALPNVGSFLQ
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgacgagacagaaaacgcagagactgttttgtagtgctattagtgcgttattg
ttgggaagtgtgttttatccatttatagttcaagcggcatcaccgaccacgactatcggg
agaaccgcggcaccagtcgatatttcttcgcaggcaaggcggatggcgttaatgtcagca
cttccggcgaatatttcacctcactatttgtctgaattgacaacgctttatacccgtcac
gctatgcaacctatgtggtctgatcatcgcgcggttcgggagtttcagcagcaattggcc
gaagtcgctctttccggtgtacaaccgcaatttactacttgggttagatggctgaccgat
gccaggctcaccgggtttgcacgtgatgttgtcctttccgatgccatgttgggatacatg
cagtttgtgtctggcgttgaaaaaaaaggtaatgactggctttacagtaaggtttcttat
ccgttggcaatgccgccggcagtaatgataaatcagtggcagcaggctatctcggcaggc
agcgaggccctttatattgccacattaataccgcatcactcgcaatacgctaaaatgcat
caggcattgaaaaatatgttattggataatcgcccgtggccgaaactggtcctgtcgggt
acattgcgacctggcgattacagtactgatttgcccgcgctgcgagaaatattacagcgt
actgggatgttgacctctgtaacatcctcaatatcgcacgacgagtcctcttccagcgtt
cagccgtccgttaatgtttatgatggagaattggttgaggcagtgaagcgttttcagcag
tggcaagggttgcaagaggacggcgtaattggtagacgtacacgtgactggcttaacgtt
tcatcccagatgcgagcaaggctgttggcactgaatattcaacgtttgcgtctggtcccg
gataatgtcaacacgggtatcatggtgaatatccccaattattctctcatctattatcat
aatggggctgaagttctgtcgtcacgggtgattgtcgggcagccgaagcgtaaaacgccg
cagatgagcagtttgctaaatgatgtggtgatgaatccgccgtggaatgttccgacaaag
ctagtgcgccaagatattattcccaaagtgattcaggacccgggctatctgcaacgccat
gactatgtcgtactttctgactggggacgagacgctcagatcatcgatccaagcatgatc
gactggccgttggtgtcggcaatgaattttccctatcggctgcgtcaatccccaggggcg
aagaattccctgggacgctataagtttaatatgccgaattcagatgcgatttatctgcat
gatacaccgaatcataacctgttccagaaggatattcgggcgttgagttcaggctgtgtc
cggatcaataaagcctctgaactggctgccttgctattacaggatgccggttggaataat
gccagaatctcctcaacaattgatcgggggaacaccatctacgtcccgatccgtcaacgt
ataccggttaatctctattatttgaccgcctgggtagccgataatggtaagcctcaattt
cgtacagatatttacaattatgatggcatggtgagaaccaatgctcaggccttgccaaac
gtcgggtcatttttgcaataa
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