Prodigiosinella confusarubida ATCC 39006: Ser39006_012360
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Entry
Ser39006_012360 CDS
T05290
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sera03016
]
Ser39006_012360
Enzymes [BR:
sera01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Ser39006_012360
Transfer RNA biogenesis [BR:
sera03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Ser39006_012360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AUH04853
UniProt:
A0A2I5T7I3
LinkDB
All DBs
Position
complement(2733853..2735784)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKATDKGFGFLEADAQKSYFIPPPQMKKVMHGDRI
VATVHTEKERESVEPESLVEPFLTRFVGRVQKKDDRLAIIPDHPLLKESISCHTAHALAH
DFQEGDWAVAEMRRHPLKGDRNFHAELTQYITNSEDPLVPWWVTLSRHDLERTAPEADTA
ALDDGDLQREDLTALDFVTIDSASTEDMDDALFVQDNDDGSLQLTVAIADPTAYVPAGSE
LDAIARHRAFTNYLPGFNIPMLPRHLSDDICSLRPGERRPVLACRMTIADDGTLDDMHFF
AAWIESKAKLAYDSVSDWLEQQGDWQPASETITHQLRLLQRVCLARSHWRTTHALVFKDH
PDYRFLLGDKGEVLDIVVEHRRIANRIVEEAMIAANVCAAQVLRDKLGFGIYNVHNGFDP
SKVEQAVTVLGNNGIHADAQHLLTLEGFCALRRELDTQPTQFLDSRIRRFQSFAEVSTTP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIISGQPTEKPQDDVTVKLSERRRLNRMA
ERDVSDWLYARFLKEKAGTDARFLAEIMDVTRGGLRVRLLDNGASAFIPASFIHAVRDEL
ACSQETGTVTVKGETVYRQSDTLEVTIAEVRLDTRNIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgctcagcttaaacagcaactccattcccaaacgcca
cgggtagaaggcgtcgttaaagctaccgataagggattcggctttcttgaagccgacgct
caaaagagttatttcattccgccaccgcaaatgaagaaagtcatgcacggtgaccgtatt
gtcgccacagtgcatacggaaaaagagcgagaaagcgtcgaaccagaatcgttagttgag
ccgttcctgacccgctttgtcgggcgtgttcagaagaaagacgatcgtctggctattatt
cctgaccatccgctactgaaagaatccatctcttgccacaccgcacacgcgttggcgcat
gactttcaggagggcgactgggctgtagcggaaatgcgccggcacccgctgaaaggtgat
cgcaacttccacgctgaactaacgcagtacattactaacagtgaggatcctctggtccca
tggtgggtgacattgtcacgtcacgatctggagcgcactgcccccgaagccgatactgcc
gcactggatgacggagatttgcagcgagaagacttaaccgcgctggattttgtcactatc
gacagtgccagtacggaagatatggacgatgccttgttcgtacaggataacgatgatggt
tcactgcaactgacggtggcaattgccgaccctaccgcgtatgtccctgctggcagtgaa
ctggatgccattgcgcgtcatcgcgcgtttaccaattatttgcctggtttcaatatcccg
atgctcccgcgccatttatcggatgatatctgttcactacggccaggagaacgtcgccca
gtactggcatgtcgcatgactatcgccgacgacggaacgctggatgacatgcacttcttc
gccgcctggattgagtccaaagccaagctggcctatgacagtgtttctgattggctggaa
caacaaggtgactggcaacctgccagcgagacaattacccatcagctccgtctgctacaa
cgcgtatgcctggcccgcagtcactggcgcacgacacatgctctggtattcaaagatcac
ccagattaccgtttcttattgggagacaaaggtgaagtgctggatatcgtggtagagcac
cgtcgcattgccaaccgtattgtggaagaagcgatgattgccgctaacgtttgtgcggcg
caggttctacgtgacaagcttggttttggcatttacaacgtacataatggctttgacccg
tccaaggtggaacaagcggtcaccgtgctgggaaataatggtattcatgccgatgcgcaa
catctgctgacattagagggtttttgtgcgttgcgccgtgaactggatactcagccaaca
caattccttgacagtcgtatccgtcgttttcagtcatttgcggaagtcagcaccacgcct
gggccgcattttggtcttggtctggaagcttatgccacctggacttcgccaatccgtaag
tacggagatatggtgaatcatcgcctgctgaaagcaattattagtggtcagccgacagaa
aaaccacaggatgacgttactgtgaagttgtcagaacgccgtcgtttgaatcgtatggct
gaacgtgatgtcagtgactggttgtatgcccgttttctaaaagaaaaagcaggcactgac
gcacgttttctggcagaaatcatggacgtgactcgcggcggtctgcgtgttcgtttactg
gataacggtgcctcggcatttattcctgcatcatttattcatgcggtacgtgatgaactg
gcatgcagccaggaaaccggtaccgtgacggtgaaaggtgaaacggtatatcgccaaagt
gatacgctggaagtgaccattgctgaagttcgtctggatactcgcaacattatcgccaaa
ccagcagcttaa
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