Prodigiosinella confusarubida ATCC 39006: Ser39006_015725
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Entry
Ser39006_015725 CDS
T05290
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sera03032
]
Ser39006_015725 (ihfB)
03036 Chromosome and associated proteins [BR:
sera03036
]
Ser39006_015725 (ihfB)
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_015725 (ihfB)
DNA replication proteins [BR:
sera03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Ser39006_015725 (ihfB)
Chromosome and associated proteins [BR:
sera03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Ser39006_015725 (ihfB)
DNA repair and recombination proteins [BR:
sera03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Ser39006_015725 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
AUH05458
UniProt:
A0A2I5TLL6
LinkDB
All DBs
Position
complement(3436955..3437239)
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AA seq
94 aa
AA seq
DB search
MTKSELIERLAGQQSHIPAKVVEDAVKEILEQMATTLAEGDRIEIRGFGSFSLHYRAPRV
GRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtctgaacttattgaaagacttgctggacagcaatctcatatcccggccaaa
gtggttgaggatgcagtgaaagagatactcgaacaaatggccacaacgctggctgaaggt
gatcgtattgagatccgagggttcggcagtttttcgcttcactaccgtgcaccgcgtgtt
ggtcgtaatccgaaaactggagataaggtggaactggaaggtaaatatgttccgcacttt
aaaccgggcaaagaattacgtgatcgcgccaatatctacggttaa
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