Prodigiosinella confusarubida ATCC 39006: Ser39006_016230
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Entry
Ser39006_016230 CDS
T05290
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00300
Lysine biosynthesis
sera00470
D-Amino acid metabolism
sera01100
Metabolic pathways
sera01110
Biosynthesis of secondary metabolites
sera01120
Microbial metabolism in diverse environments
sera01230
Biosynthesis of amino acids
Module
sera_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Ser39006_016230
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Ser39006_016230
Enzymes [BR:
sera01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Ser39006_016230
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
CMD
Romo1
Motif
Other DBs
NCBI-ProteinID:
AUH05546
UniProt:
A0A2I5TLX0
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All DBs
Position
complement(3556535..3557965)
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AA seq
476 aa
AA seq
DB search
MNVLKKLSVENLIYLKRWMVNSWVISSILILSVTTSQRVFSMHRFNYQTAFIHQNGIEKL
NFDALVQVTGTPCYIYSANQIRHDLKTLTETLPAELNYFYSLKANPNVSLIKIIRQYDVG
CEVCSAAELEMALAAGATPQQIIFVGPAKSPQELRRCVALGIKAVVVESLAELRQLNDIA
AEADRQQTFMLRINPDFSTEKARLVMSGKPRQFGIDESQALAELSCLHHYPHLKMVGIHI
YLGTRILDAEAIASNTRNILVLAEKIQQQLSFPLQFVDIGGGLGVPYYAKEQPLDLAALG
YSLAPLLAAFRQQFPQMQLMMELGRYMIARAGIFVTRVRYLKDSKGSTFAICDGGSNCHG
AAAGLGSVIRKNFPVRRLAARQEGAMQTYTLSGPLCTPTDIIADTVTLPRLAVGDLIGVF
NSGAYGPTASPVYFLSFGYPAEILVDGDRATQIRKPDGVAHMLNQQQPVELAIPQP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtattgaaaaaattatcggtagagaatttgatctatttgaaaagatggatggtg
aattcctgggtaatttcctcaatattaattctctcagtcactacctcgcagagagtattc
agcatgcaccgctttaattaccagacagcattcattcatcagaatggtattgagaaactg
aatttcgacgcgctggttcaggtaaccgggacaccatgttatatatacagtgccaatcaa
atacgacatgacctaaaaacactaacagaaacattgccagcagaattaaattacttttat
tccttaaaagccaatccgaatgtgtcactgataaaaattatcagacaatatgacgtcggc
tgtgaggtctgttccgccgccgaattggaaatggcgctggcagcgggcgccacgccacag
caaatcatttttgtcgggccagccaaatcgccgcaagagctacgccgttgtgtggcgtta
gggattaaagcggtagtggtggaatctctggcggaactgcggcagctcaatgacatcgct
gccgaagcggaccgtcagcaaaccttcatgttgcgtatcaacccggatttcagcaccgag
aaagcccggctggtgatgagcggcaaacctcggcaattcggtattgatgaatcccaggca
ctggctgagctatcgtgcctgcatcactatccacatctgaaaatggtcgggattcatatt
tatcttggcacacgcattctggatgctgaggcgattgccagtaacacccgcaacattctg
gtactggcggagaagattcagcagcaactgtctttcccgctgcaatttgttgatatcggt
ggtggcctgggtgtgccttactacgccaaggagcagccgctcgatctggctgctctcggc
tacagtctggcgccgctcctggcggcgtttcgacaacagttcccacagatgcaactgatg
atggagctgggccgttacatgattgcccgagcgggaattttcgttacgcgagtccgttat
cttaaagattccaaaggatcaacgtttgctatttgtgacggtggttctaactgccacggg
gccgcggcgggattggggtcggtcattcgcaaaaacttcccggtgcggcgtttggctgcc
aggcaggaaggtgcgatgcaaacctatacgctttccggcccgctgtgtacgccgaccgat
atcatcgctgatacggtcacactacccagattggcggttggcgacctgattggtgtgttc
aattctggtgcctatggaccaacggcttccccggtttattttctcagttttggttatccg
gcagaaattctggttgatggtgatcgggcgacgcagatccgcaaaccggatggtgtggca
catatgctgaatcagcaacaaccggtcgaacttgcgattccgcaaccctga
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