Prodigiosinella confusarubida ATCC 39006: Ser39006_016980
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Entry
Ser39006_016980 CDS
T05290
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00330
Arginine and proline metabolism
sera00480
Glutathione metabolism
sera01100
Metabolic pathways
sera01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
Ser39006_016980 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
Ser39006_016980 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
Ser39006_016980 (speF)
Enzymes [BR:
sera01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
Ser39006_016980 (speF)
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Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
DUF2441
Motif
Other DBs
NCBI-ProteinID:
AUH05670
UniProt:
A0A2I5TM90
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All DBs
Position
complement(3713007..3715169)
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AA seq
720 aa
AA seq
DB search
MQKLKIATSTSVQSCFEIQREVVDINHTDFTDIAAVVISVDDVNNGMIKQVENTGFSIPI
FIAVCCEEELDSTTLSSLTGVFELCTANTDFYGRQLEAAAAKYESELLPPFFNTLKQYVE
MGNSTFACPGHQGGQFFRKHPAGRQFFDFYGETIFRSDMCNADVKLGDLLIHEGAPCDAQ
IHAAKVFNADKTYFILNGTSASNKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDAHCFTEKYLRDQIRQVAPERASEARPFRLAIIQLGTYDGTIYNA
RQVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGF
SQTSQIHKKDKHIKGQPRYCNHKRFNNAFMLHASTSPFYPLFAALDINAKMHEGESGRRL
WRECVELGIEARKMLLEACKMIKPFVPVTVDGRPWQDYDTAVMANDLRFFNFIPGEKWHA
FSGYDESQYFIDPCKLLLTTPGIDTNTGEYTEFGIPATVLANYLRENGIVPEKCDLNSIL
FLLTPAEDIAKMQHLVALLARFEKHIEQNTLLSEVLPTIYKNNEIRYKNYTLRKLCQEMH
DLYVSYNVKQLQKEMFRKDYFPAIAMNPQDANTELVRGNVELIPLCKAEGRIAAEGALPY
PPGVLCVVPGEIWGGSALHYFLALEEGINLLPGFAPELQGVYIQQDDDGIKRAYGYVINC
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaattaaaaattgccactagtacatcggtacaatcctgcttcgaaatacaaagg
gaagtggtggatattaatcatactgattttactgatattgcggcggtcgtgatttcagtt
gatgacgttaataatggcatgattaaacaggtagaaaatacgggattctctatcccgata
tttattgcggtttgctgtgaagaagaattagacagtacgacgttatcgtcgttgaccggg
gtatttgaactgtgtacagcgaatactgacttttatggtcggcaactggaagcggcagcg
gcaaaatatgaaagtgagctattgccgccgttttttaatacattaaaacagtatgtggag
atgggtaattcaacctttgcctgtccggggcatcaaggggggcaattcttccgtaaacac
cctgcgggtcgccagttttttgatttttatggcgaaacgatattcaggtcggatatgtgt
aacgcagatgtcaaactgggggatttactgatccatgaaggtgccccttgcgacgcgcaa
attcacgcggctaaggtctttaacgccgacaaaacctatttcattttaaatggaacctct
gcatccaacaaagtggtcaccaatgcgttattaacccgcggcgatctggtgctgttcgat
cgtaataatcacaagtccaaccatcatggtgcactgattcaggctggcgccacgccagtg
tatctggaaacggcccgtaacccgttcggttttatcggcggtattgatgcccactgtttt
acggaaaaatatctgcgcgatcaaatccgccaggttgccccggaacgcgccagcgaagca
cggccattccgattggccattattcaactcggtacttatgacggcaccatttataacgcg
cgccaggtcgtggataaaataggccatctgtgtgattacattctgttcgactctgcctgg
gttggctatgaacagtttattcccatgatgaaagactgctcgccgttgctgctggaactg
aacgaaaacgatcccgggattctggtgacacaatcggtacacaaacagcaagccggtttt
tcacagacatcgcaaatacataaaaaagataaacatatcaaaggacaaccccgttattgc
aaccataaacgcttcaataatgcttttatgctacatgcgtccaccagtccgttttaccca
ttgtttgccgcattggatatcaacgccaaaatgcatgaaggggagagtggacgtcgctta
tggcgcgaatgtgttgagttgggtatcgaagcgcgcaagatgctgctggaagcttgtaag
atgattaagccttttgtgccggttactgtggatggccgcccctggcaggattacgatacc
gctgtcatggccaatgatctgcgtttctttaattttattcccggtgaaaaatggcatgca
tttagtggttatgacgaatcacaatactttattgatccttgtaaattactgttgacgaca
ccgggtattgataccaataccggtgaatatactgaattcggtattccggctacggtatta
gccaattacctgcgtgaaaatggtattgtgccggaaaaatgtgacctcaattctattctt
ttcctgctgactccggcagaagatattgccaaaatgcagcatctggtcgcattgcttgcc
cgttttgaaaaacatattgaacaaaatacattgctgagcgaggtgttacctaccatatat
aaaaataacgagatccgctataaaaattataccctacggaaactctgtcaggaaatgcac
gatctttatgtcagttataatgtcaaacagttacagaaagagatgttccgcaaagattat
ttccctgccatcgccatgaatccacaagatgccaatactgaacttgttcgcggtaatgtt
gaattaattccgctgtgtaaagcagaagggcggatcgccgcagaaggcgcattaccgtat
cctcccggcgtattatgtgtggttcccggagaaatatggggtggttcggcactgcattat
tttctggcattggaagaaggtattaatttattgccgggtttcgcaccagaattacagggt
gtctatatccaacaggacgatgatggaataaaaagagcttatggctatgtcattaattgc
taa
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