Prodigiosinella confusarubida ATCC 39006: Ser39006_018145
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Entry
Ser39006_018145 CDS
T05290
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_018145
Enzymes [BR:
sera01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Ser39006_018145
DNA repair and recombination proteins [BR:
sera03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Ser39006_018145
Prokaryotic type
Ser39006_018145
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AUH05881
UniProt:
A0A2I5TMU7
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All DBs
Position
complement(3990935..3992377)
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AA seq
480 aa
AA seq
DB search
MTTHLVWLRNDLRLTDNLALHAACQDPTANVIALFIATPAQWARHDMSPRQAAFLLKNLH
VLQRSLHDIGIELHYHQCADFTDSVRWLTEYCRQQRVTHLFYNYQYELNERQRDLSLEQE
LAGQVICQGFDDSVLLPPGSVMTGDGEMYKVFTPFREAFIKRLLHSDIHCVPAPVPRTMA
ITLPLRPLTPFSYPLQTINDAYPAGEKSALQRLRDFCHEQIQFYHQQRDFPAQAATSKLS
PYLALGVLSPRQCINRMRIEQPDWLQQREGGAFVWFNELIWREFYRHVLAFNPSVCKRQP
YIDWTQRIAWRQDPHGLAAWQRGDTGYPIVDAGMRQLNQTGWMHNRLRMICASFLVKDLL
IDWREGEHYFMMQLLDGDLAANNGGWQWAASTGMDAAPYFRIFNPTVQGERFDPEGTFIR
HWVPELALVPGKSIHQPHRWAESQRHQLNYPQPIVEHKQARLRALAAFKAAKDVNPGGDK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacatctggtctggcttcgtaacgatttacgccttaccgataatctggcatta
catgcggcttgtcaggatccgacggccaacgtgatagccctgtttattgccactccggcg
cagtgggcccggcatgatatgtcgccgcgtcaggccgcgtttttgctgaaaaatctgcat
gtgttgcaacggtctttgcatgacatcggtattgaactgcactatcaccaatgtgctgat
tttacagacagcgttcgctggctgacggaatattgccggcaacagcgagttacccatctg
ttctataactatcaatatgaattgaacgagcgccagcgggatctttcgctggagcaggaa
ttggccggacaggtaatttgtcaggggtttgacgacagtgtattgctaccgccgggtagt
gttatgactggagatggtgagatgtataaggtatttacaccatttcgtgaggcgttcatc
aaacgattgctacatagcgatatccattgtgttcccgccccggtgccgcgcacaatggca
atcactcttccactacggccgttgacaccattcagttatcccctgcaaacaataaacgac
gcatatccagcgggggaaaagtccgcattacagcggttacgtgatttctgccacgaacag
attcagttttatcaccaacaacgtgatttcccggcacaagcagctaccagtaagctttct
ccttatctcgcactgggcgtgttgtcgccacggcaatgcattaaccgtatgcggatagaa
cagcccgactggttacagcaacgtgaggggggagcatttgtctggttcaatgaactgatt
tggcgggagttttatcgccacgtgttggcattcaatccatctgtatgtaaacggcaaccc
tatatcgattggacccaacggattgcctggcgtcaggatcctcatgggttagctgcctgg
cagcggggggataccgggtatcccattgtggacgccggcatgcggcaactcaatcagacg
gggtggatgcataaccgtttgcgtatgatttgtgccagttttctggtgaaggatttgttg
atcgattggcgggaaggcgaacattatttcatgatgcaactgctggatggcgatctggcc
gctaacaatggtggctggcagtgggcggcctcgacaggaatggatgccgcgccttatttt
cgtatttttaacccaactgttcagggtgaacgttttgatcctgaagggacatttattcga
cactgggtaccagaattggcgctagtaccaggaaagtcgattcatcaacctcaccgctgg
gcggaaagtcagcgtcatcagttgaactatcctcagcctatagttgagcacaaacaggcc
cgcttacgggcgttggccgcttttaaggcggcaaaagatgtcaaccctggtggtgacaaa
taa
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