Prodigiosinella confusarubida ATCC 39006: Ser39006_018385
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Entry
Ser39006_018385 CDS
T05290
Name
(GenBank) endolytic peptidoglycan transglycosylase RlpA
KO
K03642
peptidoglycan lytic transglycosylase [EC:
4.2.2.29
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sera01011
]
Ser39006_018385
Enzymes [BR:
sera01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Ser39006_018385
Peptidoglycan biosynthesis and degradation proteins [BR:
sera01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Ser39006_018385
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DPBB_1
SPOR
Motif
Other DBs
NCBI-ProteinID:
AUH05921
UniProt:
A0A2I5TMY4
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Position
4039943..4041037
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AA seq
364 aa
AA seq
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MRKDWFWISVIGLALSGCTVTEQPQSPPHQKIYSGPVEEIGGVEPHYEPYNPSTLQDYVV
KGRTYKIVKNPENFRETGLASSYSREASGNRTATGEVFDPNALTAAHPTLPIPCYVRVTN
LSNGRQLVVRINDRGPYMPGRIIDLSKAASDRLNISNNTKVQVDFINVSPDGSLSGPGTI
GTRVAKQSFALPERPILGSSELGTPVMQTEEPSTTTTVRPISNTTLQPATNNTNTIDNTS
VSHGSFLGAPTPLRSGVLEGSEPVSTVNTPQSVVSAGSTPQPRSSDGGHYVVQVGALSDQ
QRAQNWLRSLNDRFHVSGKVTANGGLYRIQLGPFNNRQQATELQQRLLVEAKQQSFITAV
PGTR
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaggattggttttggattagtgttatcggcctggcgctttctggctgtaccgta
acggaacaacctcagtcaccaccacaccagaagatatacagcggaccagtagaagagatc
ggtggcgtggagccgcactatgagccctataacccatccacattgcaggactacgtcgta
aaagggcgcacctataagattgtcaaaaacccggaaaacttcagagaaaccggtctggca
tcatcgtattccagagaagcttcaggcaaccgtaccgccacgggcgaagtgttcgacccc
aacgcattgaccgctgcacacccaacactaccgattccctgctacgtgcgagtaacgaat
ctgagtaatgggcgccaactggtggtacgaatcaatgaccgcggcccctatatgcccggt
cggattattgacttgtcaaaagcggccagcgatcgactgaatatttccaacaataccaag
gttcaagtagattttatcaatgtatctcccgatggctcgctttctggcccaggaactatt
ggtactcgcgtagccaagcaaagctttgctttaccagaacgtcccatcctgggatccagc
gaacttggtacgccggtaatgcagactgaagaaccatctaccaccacaacagtccgccct
atcagtaacacaacattgcaacctgcgacaaacaacacaaatacaatagacaacacctca
gtttcccacgggagttttcttggcgcaccaacaccattgcgcagcggcgtactggaagga
tctgaacccgtatcaacggtaaacacaccacagtcggtggtatctgctggcagtacgcca
caacctcggtcgtcagacggcggacattacgttgtccaagtcggtgcgctgagcgatcaa
caacgggcacagaactggttacgcagcctgaacgatcgcttccacgtttcaggtaaagta
acggctaatggcgggctgtatcgtattcagttaggcccatttaataatcgacaacaagct
actgaacttcaacaacgcctgttagtcgaagctaaacagcaatcttttatcactgctgtt
cctggcacacgatag
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