Prodigiosinella confusarubida ATCC 39006: Ser39006_019420
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Entry
Ser39006_019420 CDS
T05290
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03030
DNA replication
sera03430
Mismatch repair
sera03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ser39006_019420
03430 Mismatch repair
Ser39006_019420
03440 Homologous recombination
Ser39006_019420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sera03032
]
Ser39006_019420
03400 DNA repair and recombination proteins [BR:
sera03400
]
Ser39006_019420
Enzymes [BR:
sera01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ser39006_019420
DNA replication proteins [BR:
sera03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ser39006_019420
DNA repair and recombination proteins [BR:
sera03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ser39006_019420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AUH06104
UniProt:
A0A2I5TB47
LinkDB
All DBs
Position
complement(4269819..4273301)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAASLGMPALAITDFTNLCGLVKFYGGAHSA
GIKAIVGADLLVSSEELGDEPSQLTILAMDNEGYQNLTLLISRSYQRGYGPVGPTIEREW
LIEHQHGLLLLSGGRHGDVGKFLLRGNQAQATQCLAFYQQHFPDRYYLELIRTGRPDEES
YLHSAVAVAVAHGLPVVATNDVRFISEDDFDAHEIRVAIHDGFTLDDPKRPRNYSSQQYM
RSEEEMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVKRAKEGL
EERLKYLFPNEEDRAEKRQKYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKAFAAEPQ
LGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGHHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRARAGQDPINIASIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKEGAERMNVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKDGYFKELFDLCARADTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQVDMFGVLAEAPGQVEQSYSTVSPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYAGGLRLKDMHPTERGKLTTAVGLVLSARVMVTKRGNRIGVGTLD
DRSGRLEIMLFTDALEKYQHLLEKDRILIASGQVSFDDFSSGLKMTVRELMDISDAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRENARARLRFGAAWRVTPTD
VLLNDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatgga
ctggcgaaagtcgggccgttggtaaaaaaagcagcgtcgctgggaatgccagcgctggcg
attaccgatttcaccaacctgtgtggcctggtgaaattctacggcggtgcgcacagtgct
ggaattaaggctattgtcggtgctgatttactggtttcaagtgaagagttgggcgatgag
ccgtctcaactcactatcctggcaatggataatgaaggttatcagaacctgacgctactg
atctctcgttcttaccagcggggttacggtcctgttgggccgaccattgaacgtgaatgg
ctgattgagcatcaacatggtttgttattgttgtcaggcgggcgacatggtgatgtaggg
aaatttttattacgtggtaatcaggcgcaggcaacgcaatgtttggctttttatcaacag
cattttcctgatcgttactatcttgagttgatccgtactggtcgtcccgatgaagaaagt
tatctgcattctgccgtggcagtggcggtggcgcatggtttgcccgtggtcgcgaccaac
gatgttcgctttatcagtgaagacgactttgatgcgcatgaaatccgcgttgccattcat
gatggatttacgctggacgatcccaaacgtccgcgcaattacagttcgcagcaatacatg
cgcagcgaagaggaaatgtgcgagctatttgcggatattcctgaagcgctgattaacagc
gtggagattgctaaacgttgtaatgtcactattcggctgggagagtatttcctgccgcag
tttcctacgggtgatatgtccacggaagattacctggttaagcgtgcgaaagaagggctg
gaagagcgtctgaagtatctattcccgaatgaagaagatcgggctgagaaacgtcaaaaa
tatgatgaacgtctggatattgagttgaaagtcatcaaccagatgggatttcccggttac
ttccttatcgtgatggagtttattcagtggtctaaggataacaatgtaccggttggtccg
gggcgaggttcaggcgccggatcgttggtggcgtattcgctgaagattactgatcttgat
ccgcttgaattcgatctgctgttcgaacgattccttaacccggaacgtgtctccatgcca
gactttgacgtcgatttttgcatggaaaagcgtgatctggttattgaccacgtcgcggat
atgtatggtcgggatgccgtttcccagattattactttcggtacgatggcagctaaagcg
gtaatccgtgacgtagggcgcgtactggggcatccatatggttttgtggatcgaatttcc
aagctgataccactcgatcctggtatgaccctggaaaaagcatttgccgccgagcctcaa
ttaggcgaaatttatgatgccgatgaggaagtcaaagcgttgatcgacatggcgcgcaag
ctcgaaggggtaacgcgtaatgccggtaaacacgccggtggtgtggtgatatcaccgact
aaaatcactgattttgcgccactgtattgcgatccggaaggtcatcacccagttactcag
tttgataaaagcgatgtggaatacgccgggctggtgaaatttgactttcttggcctgcga
acgctgaccatcattgactgggcactggagatgatcaacgcgcgtcgggctcgggccgga
caggatccgatcaacatcgcctctattccgctggatgataaaaagagctttgacatgcta
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaggacttgatt
aagcgcctgaagcctgactgttttgaagatatgatcgcgctggtggccttgttccgtccc
gggcccttgcagtcgggtatggtagataactttattgaccgtaagcatggtcgagaagct
atttcctatcccgatatccaatggcagcatgagtcactcaaaccggtgctggaaccgacc
tatggtattatcctgtatcaggaacaggtgatgcagatagcccaggtgctgtcagggtat
actctgggtggcgcggacatgttgcgtcgagcgatgggtaagaaaaagcccgaagagatg
gccaagcagcgctctgtgtttaaagagggcgcggagagaatgaacgtcgacggtgagctg
tcgatgaaaatctttgacctggtggaaaaattcgcgggttatggatttaacaaatcgcac
tctgcggcttatgcgctagtctcttatcagacgctgtggttaaaagcgcactatccggct
gaattcatggctgccgtgatgacagcggatatggataacaccgataaagttgtgggtctg
gtggacgagtgctggcgcatgggcctgaaaattctgccgccggatatcaatagtgggctg
taccatttccatgtgaatgatgacggagagattgtctacggcattggcgcgattaaaggc
gtgggtgaagggccgattgaagcaatcattgaagcgcgaaataaggatggttacttcaag
gagctgtttgacctgtgcgcacgtgctgatactaaaaagcttaaccgacgggtactggaa
aagctgattatgtcgggggcttttgaccgacttggacctcatcgggccgcgctgatgaat
tcgttgggggatgcgctgaaagctgcggatcagcatgcgaaagcggaagctatcgggcaa
gtggacatgttcggtgtcctggcggaggcgccgggacaggtagagcagtcatatagtaca
gtgtctccatggccggaacaggttgttctggatggtgagcgggaaacgctgggtttgtat
ctgaccggccaccctattaaccagtatcttaaggaaattgagcgttatgcaggaggctta
cgtttaaaagatatgcaccccacggaacggggaaaactcaccacggcagtcggtctggta
ctgtctgcccgagttatggtgactaagcgtggaaaccggattggtgttggtactcttgac
gatcgttccgggcgtcttgagatcatgctgttcaccgatgcactggaaaaataccagcat
ctgctggaaaaagaccgcattcttattgccagcggacaggtcagctttgatgacttcagc
agtggacttaaaatgacggtccgcgagttaatggatatcagtgacgcgcgggaaaaatat
gctcgcggacttgctatctcgctgactgacaggcaaattgatgaccagttgttaaaccgt
ctccgtcagtcgttggaaccccatcgatcagggacgattccagtgcatctttactaccaa
cgggagaatgcgcgtgcccggttacgcttcggtgctgcatggcgtgtcacgccgaccgat
gtgttgctgaatgatttgcgcactttagtgggtaatgaacaggtagaactggaatttgac
taa
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