Prodigiosinella confusarubida ATCC 39006: Ser39006_019675
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Entry
Ser39006_019675 CDS
T05290
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ser39006_019675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_019675
Messenger RNA biogenesis [BR:
sera03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Ser39006_019675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
Motif
Other DBs
NCBI-ProteinID:
AUH06150
UniProt:
A0A2I5TB74
LinkDB
All DBs
Position
complement(4329249..4329776)
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AA seq
175 aa
AA seq
DB search
MIDDDGYRPNVGIVICNRQGQVLWARRYGQHSWQFPQGGINPGESAEQAMFRELFEEVGL
RKKDVRILAFTRSWFRYKLPKRLVRWDTKPVCIGQKQKWFLLQLMCNESDINMQSSSTPE
FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFITPVIQLQENTAARMSSGSRRKRG
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgatgatgatggctaccgcccgaatgttggaattgtgatttgtaatcggcagggg
caagttctctgggctcgtcgctacggtcagcactcctggcagtttccccagggtgggatt
aacccaggtgaaagtgcagaacaggcgatgttccgtgaactgttcgaagaagttggtttg
cggaagaaagatgtccgtatcttggctttcacccgtagctggtttcgttataaattgcca
aaacgtttggtgcgttgggatacaaaaccagtctgtatcgggcaaaagcaaaaatggttt
ctgctacagttaatgtgtaatgaatcagatatcaatatgcaaagcagtagcacacctgag
tttgatggttggcgttgggtgagctactggtatccggtacgtcaggtggtttcttttaaa
cgggatgtttatcggcgggtgatgaaggagtttatcactccagttatacagttacaggag
aatactgctgcccggatgtcatcaggttccagacgaaaaagaggataa
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