Prodigiosinella confusarubida ATCC 39006: Ser39006_020775
Help
Entry
Ser39006_020775 CDS
T05290
Name
(GenBank) AMP-dependent synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00061
Fatty acid biosynthesis
sera00071
Fatty acid degradation
sera01100
Metabolic pathways
sera01212
Fatty acid metabolism
sera02024
Quorum sensing
sera04146
Peroxisome
Module
sera_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Ser39006_020775
00071 Fatty acid degradation
Ser39006_020775
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Ser39006_020775
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ser39006_020775
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sera01004
]
Ser39006_020775
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sera04147
]
Ser39006_020775
Enzymes [BR:
sera01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Ser39006_020775
Lipid biosynthesis proteins [BR:
sera01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Ser39006_020775
Exosome [BR:
sera04147
]
Exosomal proteins
Exosomal proteins of breast milk
Ser39006_020775
Exosomal proteins of breast cancer cells
Ser39006_020775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AUH06332
UniProt:
A0A2I5TBQ8
LinkDB
All DBs
Position
complement(4557810..4559288)
Genome browser
AA seq
492 aa
AA seq
DB search
MISTKMQNFLHETEDRIVIREMNGKTHYHSELRRDVEDIAAGLNQIYGSCDRLVFGIAMR
SCYEWVTTLLAIQKVGAVLLPVPIEFSDEQISSLLTKASAIFVADDATRQRIDSIFPGKP
CFYPYQVKVHSQTLRLSGEERISDGVTAIIHTSGTTSKPKGVMIRDAAVGLLVDNVMKRL
PNRPLHYFSLVPMSLLIEQVLGIFIPLLSGGTLTLMPPGIKEYGSASGNAALYLGMIAEV
EPDFLYLPPKLLEEALALIEMDGSENVLGRNNPHIITGGAKIPVSVLQALDDKGVAVYEA
YGLSENSSIISLNYPGCRRIGSVGKLLDGITPLLVEGELLVKTPTLCAGYYNSDETSCDM
TDGYLHTGDITHFEDGYLYITGRKKHVIILSTARNVSPEWVETIYKESEIIEDMIVIGEG
QEQLGAIILSPHPESDVQRALESKNNRLAEFARVGKYAVVNNIAGFRRKYYTVTGRPRRK
EIEEDYSEIVYQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgatcagtacgaaaatgcagaattttcttcatgaaacggaagatcgcatcgttattcgt
gaaatgaatggcaagacccattatcactctgaacttcgtcgtgacgttgaagatattgcg
gcgggattaaatcagatctatggatcgtgtgaccgcctggtattcggtatcgccatgcgt
tcatgttatgaatgggttaccactttattggcgattcaaaaagtcggtgcggtcttgctg
ccggtgcctatcgaattttctgacgaacagatatcgagcctgctcaccaaggcaagtgcg
atttttgttgccgatgatgcgaccaggcagcgcattgactctatattccccggtaaaccc
tgtttctacccctatcaggtgaaagttcattcgcaaactttgcgattatcgggagaagaa
cgaatcagtgatggtgtgaccgctatcatccatacctccggtacaacgtcgaaacccaaa
ggcgttatgatcagagatgcagcagtggggttgttggtagataacgtaatgaaaaggctg
ccgaataggcctttgcattatttctcccttgttcccatgagtttactgatagagcaagtt
ctgggtatttttattcctttactgtctggtggtacgctcacattaatgccgccaggtatt
aaggaatatggctccgcgtcaggaaacgcagcactctatttagggatgatcgctgaagtc
gaacctgattttctgtatctaccgccgaaattactggaagaggcactcgcgcttattgag
atggatggcagtgaaaatgtgctggggcgtaataatccacatattattactggtggtgcc
aaaattccggtatctgtgttgcaggcgttggacgataaaggggttgctgtatacgaagcc
tatggactcagtgaaaacagttccattatttcattgaattaccctggttgccggagaatt
ggttcggtgggtaaattgttggatggtattacccccttattggttgagggtgaattactg
gttaaaacgcctacgttatgtgcgggatattataattctgacgagacctcttgcgacatg
actgatggttatcttcatacgggagatattactcattttgaggatggctatttatatatt
accggtaggaagaaacatgtaattattctttctaccgccagaaatgtttcccctgaatgg
gtggaaacaatatataaagaaagtgaaattattgaggatatgattgttattggtgaaggg
caggaacaattaggtgccattattctcagccctcatcctgaatcagatgtccagcgtgca
ttagaatcaaaaaataatcgtctggccgaattcgcccgagttggaaagtatgcggtagtt
aataatattgctggttttagaagaaagtattataccgtgactgggcggccaagaagaaaa
gagattgaagaggactattctgagatagtctatcagtga
DBGET
integrated database retrieval system
