Prodigiosinella confusarubida ATCC 39006: Ser39006_021675
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Entry
Ser39006_021675 CDS
T05290
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera00521
Streptomycin biosynthesis
sera00523
Polyketide sugar unit biosynthesis
sera00525
Acarbose and validamycin biosynthesis
sera00541
Biosynthesis of various nucleotide sugars
sera01100
Metabolic pathways
sera01110
Biosynthesis of secondary metabolites
sera01250
Biosynthesis of nucleotide sugars
Module
sera_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
Ser39006_021675 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
Ser39006_021675 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
Ser39006_021675 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
Ser39006_021675 (rfbB)
00525 Acarbose and validamycin biosynthesis
Ser39006_021675 (rfbB)
Enzymes [BR:
sera01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
Ser39006_021675 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
adh_short
KR
Sacchrp_dh_NADP
Gp_dh_N
NmrA
Motif
Other DBs
NCBI-ProteinID:
AUH06493
UniProt:
A0A2I5TCA7
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All DBs
Position
complement(4753815..4754882)
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AA seq
355 aa
AA seq
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MKILVTGGAGFIGSSVVRHIIKNTANAVVNVDKLTYAGNLESLTDIENHERYTFEQVDIC
DRPRMDHVFQVHQPDVVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLESARTYWNTLGT
EKKSGFRFHHISTDEVYGDLDSADGLFTESTSYSPSSPYSASKASSDHLVRAWYRTYGLP
TIITNCSNNYGPYHFPEKLIPLMILNALEGKPLPVYGDGMQIRDWLFVEDHARALYKVVS
EGKVGETYNIGGHNEKTNIGVVKTICSLLEELVPNKPQGVKAYQDLIIYVKDRPGHDVRY
AIDAGKIARDLGWVPEETFESGIRKTVEWYLNNQSWWSRVLDGSYSRERLGAGDK
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatactggttacaggcggggccggttttattggttcctcggtagttcgtcatatc
attaaaaatacggcgaatgctgttgttaacgttgataagcttacctatgcgggaaatctg
gagtctctgaccgatatcgaaaaccatgaacggtatacgttcgagcaggtcgatatttgc
gatcggcccagaatggatcacgttttccaggtacaccagccagacgttgtcatgcatctg
gctgcagaatcgcatgttgatcgctcaattgatggcccggctgcctttattgaaacgaat
atcgtgggaacttataccctgctggagtctgctcgtacttactggaatacattaggtacg
gagaaaaaatccggatttcgtttccatcatatctctaccgatgaagtctatggtgacctg
gacagtgctgacgggcttttcactgagtcgacatcttattctccaagcagcccttattct
gcttccaaggcgtcaagtgatcacctggttcgggcatggtatcggacttatggtttgccg
accattatcaccaactgctcgaataactatggcccctaccattttccggaaaagctcata
ccactaatgattcttaatgcgcttgaagggaaaccgttacctgtctatggcgatggaatg
cagattcgtgactggctatttgttgaggatcatgccagagccctttataaggtcgtttcc
gaagggaaagtcggggagacgtacaatattggcggtcataacgaaaaaaccaatattggt
gtggtgaaaacaatatgttcactattggaagagttggttcccaataagccccagggcgtg
aaggcgtatcaggatctgattatctatgttaaagatcggcccggtcacgatgttcgttat
gctattgatgccggaaaaattgcacgggatcttggctgggtaccggaagaaacctttgag
tccgggattcgcaaaacagtagagtggtatttgaataatcagagctggtggagccgtgtc
cttgatggttcttatagccgtgaacggttaggcgcgggggataaataa
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