Prodigiosinella confusarubida ATCC 39006: Ser39006_022005
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Entry
Ser39006_022005 CDS
T05290
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ser39006_022005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_022005
03009 Ribosome biogenesis [BR:
sera03009
]
Ser39006_022005
Enzymes [BR:
sera01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ser39006_022005
Messenger RNA biogenesis [BR:
sera03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ser39006_022005
Ribosome biogenesis [BR:
sera03009
]
Prokaryotic type
rRNA helicases
Ser39006_022005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AUH06550
UniProt:
A0A2I5TCD9
LinkDB
All DBs
Position
complement(4821685..4823559)
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AA seq
624 aa
AA seq
DB search
MAEFEISFASLGLSAPIINALSDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLQNINVDLKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLSLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVHGARKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLNLLI
ATDVAARGLDVDRISLVVNYDIPMDEESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGQRRLAKFASKVQQQLESSDLDMYRALLAKLQPQDEFDMET
LAAALLKMAQGERPLILPPDPVIDRRPRRESRDRDESPRGERRRDGRGEARDGERPPRRE
RRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPG
DLLSHFTRTRILNKPMNMQLMGDAQPHERRERGGAGATPARGGRSFSDRPAGAGRPFSGE
RREGGGERRGGGRDGQRAPRRSEA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctgagtttgaaatttcttttgctagcttggggctatccgctccaattattaatgcc
ctgtcagatctgggttacgaaaaaccatcacccattcaggcagaatgtatccctcatctg
ctcaacggccgtgatgtgctgggtatggcacagaccgggagtggtaaaacagcggcattc
gctttgccgttattacagaatattaacgtagatttaaaagcaccgcagatgctggtgctg
gccccaacccgcgagctggcggtgcaggtggctgaagcctgtagtgattttgccaagcat
atgcatggcgtcaacgtagtagcgttatatggcggtcaacgctatgacgtacagctgcgt
gcgttgcgtcaggggcctcagattgtcgtgggtacgcccggacgtctgctggatcatctg
aagcgcggcacgctgagtctgtccaatcttagtggattggtactggatgaagctgatgaa
atgctgcgtatgggctttattgaagatgtagaaaacatcatggcgcagatcccggctgag
catcagacggcgctgttctctgcaacgatgccggaagcgatccgtcgcattactcgtcgg
ttcatgaaggatccacaagaagtccgtattcagtccagcgttactactcgcccagacatt
agccagagttactggacggtgcatggtgcgcgcaaaaacgaagcattgatccgtttcctg
gaagcagaagattttgatgcggcgattatttttgtccgtaccaaaaacgcaacgttggaa
gtggcagaagcgctagagcgcagcggttacaatagtgccgcactgaacggtgacatgaat
caggcattgcgtgaacaaacgctggaacgtcttaaagatggtcgcttgaatcttctgatt
gcaacggatgtggcggctcgtggtcttgatgtggaccgtattagtctagtcgtcaactac
gacatcccgatggatgaagaatcttatgtccaccgtattggtcgtacgggtcgtgcgggt
cgtgcgggtcgtgcgctgttgtttgtagagaatcgtgaacgtcgcctgctgcgcaatatt
gagcgcaccatgaagctgactatcccggaagtggaattaccgaatgcagagctgctgggg
cagcgtcgtttggccaagtttgcttctaaagtgcaacagcagttggaaagcagtgatctg
gatatgtaccgtgcgctgttggccaagttgcagccacaggatgagtttgatatggaaacg
ctggctgcggcgttactgaaaatggctcaaggtgagcgtccgctgattctgccgccggat
ccggtgattgatcgtcgtccacgccgtgaatctcgtgatcgtgatgaatcaccacgtggt
gagcgtcgtcgtgatggccgtggcgaagcacgtgacggggaacgtcctccgcgtcgtgaa
cgccgtgatgtgggtgacatggagttgtaccgcattgaagtgggtcgtgatgatggtgtt
gaagtacgtcacatcgtgggtgccattgctaatgaaggcgatatcagtagccgctacatc
ggtaacatcaagttgtttgctacccattccactattgagctgccgaaaggaatgccgggt
gacctgttgtcgcactttacccgtacacgcatcctgaacaagccaatgaatatgcaactg
atgggtgatgctcagccacatgaacgtcgcgaacgtggtggtgcaggtgcaacaccggct
cgcggtggtcgttctttcagtgatcgccccgcaggcgctggccgtccttttagtggcgaa
cgccgtgaaggtggtggcgaacgtcgcggtggtggccgtgatggtcaacgcgcaccgcgt
cgcagcgaagcataa
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