Prodigiosinella confusarubida ATCC 39006: Ser39006_022015
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Entry
Ser39006_022015 CDS
T05290
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sera
Prodigiosinella confusarubida ATCC 39006
Pathway
sera03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sera00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ser39006_022015 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sera03019
]
Ser39006_022015 (pnp)
03016 Transfer RNA biogenesis [BR:
sera03016
]
Ser39006_022015 (pnp)
Enzymes [BR:
sera01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ser39006_022015 (pnp)
Messenger RNA biogenesis [BR:
sera03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ser39006_022015 (pnp)
Transfer RNA biogenesis [BR:
sera03016
]
Prokaryotic type
tRNA degradation factors
Ser39006_022015 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
S1_RRP5
aRib
KH-I_KHDC4-BBP
Spt6_S1
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AUH06552
UniProt:
A0A2I5TPR3
LinkDB
All DBs
Position
complement(4824746..4826869)
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AA seq
707 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYINDQYVLNPTIDELKESRLDLVVA
GTQGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALVAEAGKPKWDWSSPKVNA
ALQSRVQALSEARLGDAYRIIEKQERYAQVDAIKAEVTAVLLAEDATLDEDEIRDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDELTGERTDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSD
ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISIPRGEISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DSEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQPQESVSVSGEEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgtacgtaaattccaatatggtcaacacactgtcactctggaaaca
gggatgatggcgcgtcaggctactgctgctgttatggttagtatggatgacactgcagta
tttgtgacggtagtgggtgctaaacacgctaaacctggtcaggactttttcccgctaact
gtcaactatcaggagcgtacttacgctgctggccgtatcccgggtggttttttccgtcga
gaaggtcgtccgagtgaaggcgaaaccctgatctcccgcctgattgaccgtcctattcgt
ccgctgttcccagatggttttgtgaacgaagttcaggttattgccacggtggtgtcggtg
aatccgcaagtaagcccggatatcgttgccatgatcggtgcttctgctgcgttgagcctg
tctggtattccgttcaatggtcctatcggtgtcgctcgtgttggttatatcaacgaccag
tatgtgctgaacccgactattgatgaactgaaagaaagtcgtctggatctggttgtggcc
ggtacccagggggctgtactgatggttgaatccgaagctgacttattaagtgaagatcag
atgttgggtgccgttgtctttggtcatgaccagcagcaggtagttattgagaacatcaag
gcgctggttgctgaagcaggtaaaccgaaatgggactggtcgtctccgaaagtgaatgct
gcattgcagagtcgtgtacaggcgctgtctgaagcccgtttaggtgatgcttatcgcatt
attgaaaagcaagagcgttacgcacaggttgatgctatcaaagctgaagttactgcggtg
ttattggcagaagatgctacgctggatgaagatgaaatccgcgacattttgggcagcatt
gagaaaaatgtggttcgtagtcgagtgttacgtggtgaaccgcgtattgatggtcgtgaa
aaagacatgatccgtggtctggatgtgcgtaccggtgtgttgccgcgtactcatggttct
gctctgtttacccgtggtgagacacaagcgttggtgaccgctacattgggtactgagcgt
gatgctcagaatattgatgaactgaccggtgaacgcactgatcgtttcatgttgcactac
aatttccctccgtattccgtaggtgagactggtatggtcggatcaccgaagcgtcgtgag
atcggtcatggccgtctggcaaaacgtggtgttctggctgttatgccgaaagcgagtgaa
ttcccgtataccgtgcgtgtggtatccgaaattaccgaatctaatggctcctcttctatg
gcgtctgtttgtggtgcctctttggcattgatggatgctggtgtgccgattaaagccgct
gtagcgggtatcgctatgggattggtaaaagaaggcgacagttatgttgtcttgtccgat
attcttggtgacgaagaccacttgggcgatatggactttaaagtggctggtagccgtgat
ggtgtaaccgcgctgcagatggacatcaagattgaaggcattacccgtgaaatcatgcaa
gttgcgctgaatcaggcaaaaggtgcccgtttgcatattctgggtgtgatggagcaagca
atcagcataccgcgtggtgaaatctctgagttcgcaccgcgtattcatacgatcaagatc
agtactgacaagatcaaggatgttattggtaaaggcggttctgttatccgtgcattgacc
gaagagactggcactaccatcgaaattgaagatgacggtacagtgaaaatcgcgtcaacg
gatagcgagaaggcaaaacatgccattcgccgtatcgaagagattaccgctgagattgaa
gtcggtcggatttatcaaggtaaagtgacccgtattgtagactttggtgctttcgtagct
atcggtggtggtaaagaaggtttggtacacatttctcaaatcgctgataagcgtgttgag
aaagtgactgattatctgcaaatgggtcaggaagttccggttaaagtactggaagttgat
cgccagggacgagttcgtctgagcattaaagaagccaatgcccagcctcaggaatcggtt
tccgtttccggggaagaagaataa
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