Serratia sp. B1: QEP77_09405
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Entry
QEP77_09405 CDS
T10611
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
serb Serratia sp. B1
Brite
KEGG Orthology (KO) [BR:
serb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
serb03016
]
QEP77_09405
Enzymes [BR:
serb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QEP77_09405
Transfer RNA biogenesis [BR:
serb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QEP77_09405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
WIF08359
LinkDB
All DBs
Position
complement(1915683..1917617)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITDGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPDAALVREDLTALEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGEDIQF
FAAEIESKAKLVYDEVSDWLDGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLDGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctacttcattccgccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgatcgtctgtccatcgtg
cccgatcatccgttgctgaaagacgcgattccgtgccgcccggtgcgtgaactgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgccatccgctgaaaggcgat
cgcggcttcaacgccgacctgacccagtttatcaccgacggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgcaggccctc
agcgagccggacgctgcgctggtgcgtgaagatctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgctgtacgtgaccgacaacggtgacggt
tcgctgcagttgaccatcgccatcgccgatcctactgcctacgtagaacaaggcagcaag
ctggacgatatcgcccgcgtgcgcgccttcaccaactatctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaacgagcgccgtcag
gtgctggcttgccgcgtgaccatcgccgccgacggcgcgctgggcgaagatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtctccgactggctg
gacggcattgccggctggcaaccgccgagcgacgccatcgcgcaacagatcaccctgctg
aaacgcgtttgcgacgcgcgcaacgcctggcgccaccagcatgcgctggtattcaaagat
cgcccggactaccgcttcgtgctgggtgaaaaaggcgacgtgctggagatcgttaccgag
cagcgccgcagcgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgtgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgcgctggttgagcaagcggtcaccgtactgcaggccaacggcgtcgaagccgaagcc
gagaagctgctgaccctcgacggtttctgcgaactgcgccgccacctggatgcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgccgagatcagcactacg
ccggggccacacttcggtctggggctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgatatggtcaaccatcgcctgctgaaggcgatcatcaaccagcagccggcg
gaaaaaccgcaggatgacgtgacggtgcagctggcggaacgccgccgtctgaatcgcatg
gcggaacgcgacgtcggcgactggctgtacgcccgtttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagatcatcgacgtgacacgcggcggcctgcgcgtgcgcctg
ctggacaacggcgcggttgccttcatcccggcgccgttcattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaaaggcgaagtggtttatcgccag
agcgataccttgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtaatcgcc
cggccggcggcctga
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