Serratia sp. B1: QEP77_16045
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Entry
QEP77_16045 CDS
T10611
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
serb Serratia sp. B1
Pathway
serb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEP77_16045 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serb03019
]
QEP77_16045 (rhlE)
Enzymes [BR:
serb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QEP77_16045 (rhlE)
Messenger RNA biogenesis [BR:
serb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QEP77_16045 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
UvrD-helicase
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WIF05466
LinkDB
All DBs
Position
complement(3246561..3247940)
Genome browser
AA seq
459 aa
AA seq
DB search
MSFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPVKGRRPVRALILTPTRELAAQIGENVDAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQGGGRGAPRGNGGGQRSGNGGGQRSGNAN
GGQRENRGNGNGNARPQGDGQRRSGAPASRRPRSRKPAE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattgtgcgcgctgttgaagaacagggc
tatcgcgaaccgacgccaattcagcgtcaggctatccctgtcgtgctggaaggtcgtgac
ctgatggccagcgcccagaccggcaccggtaaaaccgccggttttaccctgccgctgttg
cagctgctgagcaagcatgaccatccggtcaaaggccgtcgcccggtgcgcgcgctgatc
ctgacgccaacccgtgagctggcggcgcagatcggcgaaaacgtcgatgcctacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggcggcgtcgatatcctggtggcgacgccgggtcgtctgctggatctggaa
catcagaacgcggttgacctgtccaaaatcgaaattctggtgctggacgaagcggaccgc
atgttggacatgggctttatccacgacatccgccgcgtgctggccaagctgccggccaag
cgccagaacctgctgttctccgccaccttctccgacgacatcaaggcgctggccaacaaa
ctgctgcataacccggcctcggtggaagtggctcgccgcaataccgcgtccgagcagatc
gagcagagcgtgcacttcgtcgacaagaagcgtaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggaaacaggtgctggtctttacccgcaccaagcacggtgccaaccac
ctggcggaacagctgaacaaagacggcatcaccgctgcggcgatccacggcaacaagagc
cagggcgcccgtacccgtgcgctggccgattttaaagacggccgcatccgcgtgctggtg
gcgaccgacattgcggcgcgcggtctggatatcgaccagttgccgcacgtggtgaactac
gagctgcctaacgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcggag
cgtaccggcgaagccatctcgctggtgtgcgtggatgaacacaagctgctgcgcgacatc
gagcgtctgctgaagcgtgaaattccgcgcattgctctgccgggctacgagccggatccg
accatcaaggctgagccgatcatcaacggccgccagggtggcggacgcggcgcgccgcgc
ggcaacggcggtggccagcgttccggtaacggcggcggtcagcgcagcggtaacgccaac
ggcggccagcgtgaaaaccgtggcaacggtaacggcaacgctcgcccgcagggtgacggc
cagcgccgttccggcgcgccggcctcgcgtcgcccgcgcagtcgcaaaccggccgaataa
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