Serratia sp. B1: QEP77_16115
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Entry
QEP77_16115 CDS
T10611
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
serb Serratia sp. B1
Pathway
serb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
serb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QEP77_16115 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serb03400
]
QEP77_16115 (uvrB)
DNA repair and recombination proteins [BR:
serb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QEP77_16115 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QEP77_16115 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
SBDS_domain_II
DUF87
Motif
Other DBs
NCBI-ProteinID:
WIF05474
LinkDB
All DBs
Position
complement(3259339..3261351)
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AA seq
670 aa
AA seq
DB search
MSKLFKLHSDFKPAGDQPEAIRKLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQ
YSRNDQAFQRATFRVRGEVIDIFPAESDELALRVELFDDEVERLSLFDPLTGQIEQVVPR
FTIYPKSHYVTPRERIIQAMEEIKVDLADRRKVLLANNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRAEGEPPPTLFDYLPADGLLVVDESHVTIPQIGAMFKGDRARKET
LVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKYELEKSGGDLIDQVVRPTGLLD
PIVEVRPVATQVDDLLSEIRKRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITDSMAKAIGETERRRAKQQAYNEANGIVPQGLNKKIGDILQIG
QPVNRAKGKGRGKAADSGAQLQNLTPKALDQKIRDLEAQMYTHAQNLEFEQAAALRDEIH
QLREQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacttttcaaactgcattctgatttcaaaccggccggcgatcagccggaagcc
atccgcaaactggaagaggggttggaagacggcctggcgcaccagacgctgctgggggta
accggctcgggaaaaacgttcaccatcgccaacgtgatagccgatctgaatcggccgacc
atggtgctggcgccgaacaagacgttggcggcgcagctgtacggcgagatgaaagagttt
ttcccggagaatgcggtggagtacttcgtctcttactacgactactaccagccggaagcc
tacgtgcccagctccgacaccttcattgaaaaagacgcttcggtgaatgagcacatcgag
cagatgcgcctttccgccaccaaggcgctgctcgagcggcgcgacgtggtggtggtggcg
tcggtgtcggcgatctacggcctgggcgatccggatctttacctgaagatgatgctgcat
ctgaccaagggcatgatcatcgatcagcgctccattttgcgccggctggcggagctgcag
tattcccgcaacgatcaggctttccagcgcgccaccttccgcgtgcgcggcgaggtgatc
gacatcttcccggcggagtcggacgagctggcgctgcgcgtcgagctgttcgacgacgaa
gtggagcggctgtcgctgttcgatccgctgaccgggcagattgagcaggtggtgccgcgt
tttaccatctacccgaagtcgcactacgtgacgccgcgcgagcggatcattcaggcgatg
gaagagatcaaggtcgatctggcggaccgccgcaaggtgctgttggccaacaacaagctg
ctggaagagcagcgcctgacgcagcgcacccagttcgatctggagatgatgaacgagctg
ggttactgctcgggcatcgaaaactactcgcgctacctttccgggcgcgccgagggcgag
ccgccgccgacgctgttcgattacctgccggcggacggcctgctggtggtcgacgaatcc
cacgtcaccattccgcaaatcggcgcgatgttcaagggcgaccgcgcgcgcaaggaaacg
ctggtggagtacggtttccgcctgccgtcggcgctggacaaccgcccgctgcgcttcgag
gagttcgaggcgctggcgccgcagaccatctatgtctccgccacgccgggcaaatatgag
ctggagaaatccggcggcgatctgatcgaccaggtggtgcgcccgaccgggctgctggat
ccgatcgtggaagtgcggccggtcgccactcaggtggacgatttgctctccgagatccgc
aagcgtgcggcgatcaacgagcgcgtgctggtgaccaccctgaccaaacgcatggcggaa
gacctgaccgaatacctggaagagcatggcgagcgcgtgcgctacctgcactcggatatc
gacaccgtggaacgcgtcgaaatcattcgtgacctgcgtctgggcgagtttgacgtgctg
gtgggcatcaacctgctgcgtgaggggctcgacatgcctgaggtgtcgctggtggcgatt
ctggacgccgacaaggaaggtttcctgcgttccgaacgttcgctgatccagaccatcggc
cgcgcggcgcgtaacctgaacggcaaggcgatcctgtatggcgatcgcatcaccgattcg
atggccaaagcgatcggtgaaaccgagcggcggcgcgccaagcagcaggcttacaacgaa
gccaacggcatcgtgccgcaggggctgaacaagaagatcggcgacattctgcagattggc
cagccggtcaaccgcgccaagggtaaaggcaggggcaaggcggcggacagcggcgctcag
ctgcagaacctcacgccgaaagcgctggatcagaaaatccgcgatctggaagcgcagatg
tatacccatgcgcaaaatctggagttcgagcaggcggctgcgctgcgcgacgagatccac
cagctgcgcgagcagttcatcgcgatttcctga
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integrated database retrieval system
