Serratia sp. HRI: GF111_09110
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Entry
GF111_09110 CDS
T10951
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
serh Serratia sp. HRI
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
serh03009
]
GF111_09110 (rlmD)
Enzymes [BR:
serh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GF111_09110 (rlmD)
Ribosome biogenesis [BR:
serh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GF111_09110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_11
CMAS
FtsJ
Methyltransf_23
Methyltransf_4
DHDPS
Ribosomal_L22
DOT1
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
UBI65986
LinkDB
All DBs
Position
complement(1858899..1860248)
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AA seq
449 aa
AA seq
DB search
MAQFYSPKRRVTTRQSSQIFTVTVSDLDPFGQGVARHDGKAVFVPGVLPGEQAEIQLTED
KRQFAKGKLKRLLSRSPQRVAPRCPHFGVCGGCQQQHADEALQQQSKAAALVRMIARETG
VTPQQEPVIAGPEYGYRRRARLSLAWQPKPQRLMMGFRQAASSELVAVEHCPVLRPELEQ
LLAPVRACLSGLQAVRRLGHVELVLADNGPLLVLRHLDALKEADRQALLAFGERENVAVY
LAPDSDRVEKLCGDTPYYQVDGLRLDFSPRDFIQVNDAVNQQMVAQALEWLDIQPNDRVL
DLFCGMGNFTLPLARRAAAVVGIESVATLVANGQYNAHKNKLNNASFFHENLEDDVARQP
WAAQGFDKVMLDPARAGAAGVMSHIVKLAPARVVYVSCNPTTLARDSKVLLSAGYRLARV
RMLDMFPHTGHLESMALFINERAPEVAAK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctcccaaacgccgcgtgacgacccggcagagctcacaaatcttc
accgtgacggtgagcgatctcgatcctttcggccagggcgtggcgcgccacgacggcaaa
gcggtgttcgtgccgggcgtattgccgggcgagcaggcggaaatccagctgaccgaagac
aagcgccagttcgccaaaggcaagctcaaacgcctgctgagccgcagcccgcagcgggtg
gcgccgcgctgcccgcatttcggcgtctgcggcggctgccagcagcagcatgcggatgag
gcgctgcaacagcagagcaaggcggcggcgctggtgcgcatgatcgcccgcgaaaccggg
gtgaccccgcagcaggaaccggtgatcgccggcccggaatacggctatcgccgccgcgcc
cgcctgagcctggcgtggcagcccaagccacagcgcctgatgatgggttttcgacaggcg
gcctccagcgagctggtggcggtggagcactgcccggtgctgcggccggagctggaacag
ctgctggcgccggtgcgcgcctgcctgagcgggctgcaggcggtacggcggctggggcat
gtggagctggtgctggcggataatggaccgctgctggtgctgcgccatctcgacgcgctg
aaagaggcggatcggcaggcgctgttggcgtttggcgagcgggaaaacgtcgccgtttat
ctggcgccggacagcgatcgcgtcgagaaactgtgcggtgacacgccgtattatcaggtt
gacgggctacgcttagacttcagcccgcgcgactttattcaggtcaatgacgccgtaaac
caacaaatggtggcgcaggcccttgaatggctcgatattcaacccaatgatcgggtgctg
gacctgttctgcggcatgggtaacttcaccctgccgttggcgcgccgggccgctgcggtg
gtgggcatcgaaagtgttgccacgctggtagcgaatgggcaatataatgcacataagaat
aagctgaataatgcatcgttcttccacgagaatctggaggacgacgttgcgcggcaacct
tgggcagcacaagggtttgataaggtgatgctggatcccgcccgtgccggtgcggccggg
gtgatgtcacacattgtaaaactggcgccggcgcgggtggtgtatgtttcctgtaacccc
accacgctggctcgcgacagcaaagtgctgttgagcgccggttatcgtcttgcgcgcgtg
cggatgttggatatgtttccgcacacggggcatcttgaatcaatggcgctgtttatcaac
gagcgcgcgccagaggtcgctgcaaagtag
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