Serratia sp. HRI: GF111_11675
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Entry
GF111_11675 CDS
T10951
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
serh Serratia sp. HRI
Pathway
serh00071
Fatty acid degradation
serh00280
Valine, leucine and isoleucine degradation
serh00310
Lysine degradation
serh00362
Benzoate degradation
serh00380
Tryptophan metabolism
serh00410
beta-Alanine metabolism
serh00640
Propanoate metabolism
serh00650
Butanoate metabolism
serh00907
Pinene, camphor and geraniol degradation
serh00930
Caprolactam degradation
serh01100
Metabolic pathways
serh01110
Biosynthesis of secondary metabolites
serh01120
Microbial metabolism in diverse environments
serh01200
Carbon metabolism
serh01212
Fatty acid metabolism
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
GF111_11675 (fadB)
00650 Butanoate metabolism
GF111_11675 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
GF111_11675 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
GF111_11675 (fadB)
00310 Lysine degradation
GF111_11675 (fadB)
00380 Tryptophan metabolism
GF111_11675 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
GF111_11675 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
GF111_11675 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
GF111_11675 (fadB)
00930 Caprolactam degradation
GF111_11675 (fadB)
Enzymes [BR:
serh01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
GF111_11675 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
GF111_11675 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
GF111_11675 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
GF111_11675 (fadB)
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UBI66450
LinkDB
All DBs
Position
2420299..2422488
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQGETLQLHWLDNGIAELVFNASGSVNKLDTRTVASLGEALTVLENQPELKGLLLRSS
KAAFIVGADITEFLSLFAAPAEKLQEWLVFANNVFNRLEDLPVPTISAINGYALGGGCEC
ILATDFRVASPDARIGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDALK
VGLVDAVVAPEKLAEAALKMLQQAIDGKLDWRAVRQPKLEPLKLSPIEAAMSFTTAKGMV
LQTAGKHYPAPMTAVKTIEAAAKLGRDEALKLETASFVPLARSNEARALVGIFLNDQFVK
GQAKKLAKNVDAPKQAAVLGAGIMGGGIAYQSALKGVPVIMKDISDKSLTLGMSEAAKLL
NKQLERGKLDGLKMAQVLSTIQPTLDYAGIERAQVIVEAVVENPKVKAAVLSEVENLIGE
DTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQTSDDTIAKVVAY
ASRMGKTPIVVNDCPGFFVNRVLFPYFAGFSLLLRDGADFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPDRMSKDYRDAIDVMFDNQRFGQKNQLGFYRYSQDSKGKP
RKDHDEQTDVLLAEVSQPRQTISDEEIIARMMIPMINEVVRCLEEKIVASPAEADMALVY
GIGFPPFHGGAFRYLDTLGTANYVELAQRYAHLGALYQVPAGLRAKAERNESYYPVATPL
SDVATRQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaggcgaaacattacaactgcactggctcgataacggcatcgccgagctg
gtgttcaacgcatcgggctcggtcaacaagctggacacccgcaccgtcgccagcctaggc
gaagcgctcaccgtgctggaaaaccaacctgagctgaaggggctgctgctgcgctcctcc
aaagccgcgtttatcgtcggcgccgatatcaccgaattcctttctctgttcgccgcaccg
gctgaaaagctgcaagagtggctggtgttcgccaacaacgtctttaaccggctggaagat
ttgcctgtgccgaccatttcggccattaacggctatgcgctcggcggcggttgcgaatgc
attctggcgaccgatttccgcgtcgcctcaccggacgcgcgcatcggcctgccggaaacc
aaattgggcatcatgccgggcttcggcggttccgtccgcctgccgcgcctgctgggtaac
gacagcgcgctggaaatcatcgccgccggcaaagacgtcagcgccaaagacgcgttgaaa
gtcggcctggtggatgcggtggtggcaccggaaaaactggccgaagcggcgctgaaaatg
ctgcaacaggcgatcgacggcaagctggactggcgcgccgtgcgtcaacctaagctggag
ccgctgaagctcagcccgattgaagccgcgatgagcttcaccaccgccaaaggcatggtg
ctgcagaccgccggaaaacattacccggcgccgatgaccgcggtgaaaaccattgaagcc
gccgccaagctgggccgcgatgaagcgctgaaactggaaaccgccagcttcgtgccgttg
gcgcgctccaacgaagcgcgcgcgctggtcggcatcttccttaacgaccagttcgtgaag
ggccaggcgaaaaagctggccaagaatgtggatgcgccgaaacaggcggcggtgctgggc
gctggcattatgggcggcggcatcgcctaccaatcggcgctgaaaggcgtgccggtgatc
atgaaagacatcagcgacaagtcgctgacgctgggcatgagcgaagcggccaagctgctc
aataagcagctggagcgcggcaagctggatggcctgaaaatggcgcaggtgctgtcgacc
attcagccgacgctggactacgccggcatcgagcgcgcacaggtgatcgttgaagcggtc
gtcgagaatccgaaggtcaaagccgccgtgctgtcggaagtggaaaacctgatcggtgag
gacaccgttctggcgtcgaacacctcgaccattccgattaatcacctggcaaaatcgctg
aagcgcccgcaaaacttctgcggcatgcacttctttaacccggtacaccgcatgccgctg
gttgaaatcatccgcggcgaacagaccagcgatgacaccatcgccaaagtggtggcctac
gccagccgcatgggcaaaacgccgatcgtggtgaacgactgcccgggcttcttcgtcaac
cgcgtgctgttcccgtatttcgccggcttcagcctgctgctgcgcgacggcgccgacttc
cgtcagatcgataaagtgatggaaaaacagttcggctggccgatgggcccggcctacctg
ctcgacgtcgtgggcatcgacaccgcgcaccacgcgcaggcggtaatggccgccggcttc
ccggatcgcatgagcaaagactatcgcgacgccattgacgtgatgttcgacaaccagcgc
ttcggtcagaaaaatcagctgggcttctaccgctacagccaggacagcaaaggcaaaccg
cgcaaggaccacgacgagcagaccgatgtgctgctggccgaagtgagccaaccgcgccag
accatcagcgacgaagaaatcatcgcgcgcatgatgatcccgatgatcaacgaagtggtt
cgctgcctggaagagaagatcgtcgccagcccggcggaagccgatatggcgttggtctac
ggcatcggcttccctccgttccacggcggcgcgttccgctacctggatacgctcggcacc
gccaactacgttgagctggcccagcgttacgcacacctcggcgccctgtatcaggtgccg
gccggtctgcgcgccaaggccgaacgcaatgaaagctactacccggtggcgacaccgctg
tccgacgtcgctacccgccaaccggcatga
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