Serratia sp. HRI: GF111_17430
Help
Entry
GF111_17430 CDS
T10951
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
serh Serratia sp. HRI
Pathway
serh03410
Base excision repair
serh03430
Mismatch repair
serh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GF111_17430 (recJ)
03430 Mismatch repair
GF111_17430 (recJ)
03440 Homologous recombination
GF111_17430 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serh03400
]
GF111_17430 (recJ)
DNA repair and recombination proteins [BR:
serh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GF111_17430 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GF111_17430 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GF111_17430 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
UBI62638
LinkDB
All DBs
Position
3638905..3640638
Genome browser
AA seq
577 aa
AA seq
DB search
MSIKTQLRRRPAADDTHLPASLPPLLRRLYALRGVQGEQELERGVKGMLPWQQLDGIDDA
VSLLQQALADGRRIIVVGDFDADGATSTALTVLALRSMGGATVDYLVPNRFEDGYGLSPE
VVEQAAARGAELIVTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCAFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVPGLHMRDALERLDMLNP
GLMMKFGGHAMAAGLSLEEARFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLT
TAELLREGGPWGQAFPEPTFDGKFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagtattaaaacgcaactacgccgccgtccggcggcggacgacacgcatctgcccgcc
agtttgccgccgctgctgcgccggctttacgccctgcgcggcgtgcagggtgagcaggag
ctggagcgcggcgtcaagggcatgctgccctggcaacagctggacggcatcgacgacgcc
gtcagcctgctgcaacaggcgctggccgacggtcgccgcatcatagtggtgggcgatttc
gacgccgacggcgccaccagcactgcgctgacggtgctggcgctgcgcagcatgggcggc
gcaaccgtcgactatctggtgccgaaccgctttgaagacggctacggcctgagccccgaa
gtggtggagcaggcggcggcgcgcggcgcggagctgatcgtcaccgtcgataacggcatc
tcctcgcacgccggcgtcgacgtggcgcacgccaagggcatgcaggtgctggtgaccgat
caccacctgccgggcgagaccctgccggcggccgaagcgatcgtcaatcccaacctgcgc
ggctgcgccttcccgtccaaatcgctggccggagtgggcgtcgcgttctacctgatgttg
gcgctgcgcgcccggctgcgggacagcggctggttcgaacagcgcgcgctggcgatgccc
aatctggcggaactgctggatctggtggcgctcggcaccgtggccgacgtggtgccgctg
gacgccaacaaccgcattctggtgtatcaagggttaaaccgcatccgcgccggcaaatgc
cgtccgggcatccgcgcgctgcttgaggtagccaaccgcgacgcccgccagctggcggcc
aacgatctcggtttcgccctcggcccgcgtctcaatgccgccggcaggcttgacgacatg
tcgatcggcgtggcgctgctgctgagcgacgacatcgcgcaggcgcgtatgctggccaac
gatctcgacgcgttgaaccagacgcgacgcgagatagagcagggcatgcaggtggaagcc
ctgcagctgtgcgaccagttggagcgcaccagcaccgagctgccttacggactggcgatg
tatcacccggaatggcaccagggcgtggtgggtatcctcgcttcacgtatcaaagagcgt
ttccaccgtccggtgatcgcgttcgcgccggcgggtgacggcatcctgaaaggctccggc
cgttcggtgcccggcctgcacatgcgcgacgccctggagcggctggatatgctgaacccc
ggcctgatgatgaagttcggcggccacgcgatggcggccgggctgtcgctggaagaggcc
aggttcgacgagttccgccagcgcttcggcgagttggtgggggaatggctcgatccggcg
atgctggaaggggtgatctggtccgacggcgaactggcgatgcaggagctgtcgctgacg
acggcggagctgctgcgcgagggcggcccgtggggccaggcgttcccggaaccgaccttt
gacggcaaattccgcatcctgcagcagcggctggtgggcgagaaacacctgaagctgatg
gtggaaccgctcggcggcggcccgctgctcgacggcatcgcgttcaacgtggacaccacg
ctgtggccggacagcagcgtgcgcgaggtcgaattggcctacaagctcgacgtcaacgag
tttcgcggcaaccgcaacgtgcagctgctgatccagcatctttggccgcgctga
DBGET
integrated database retrieval system
