Serratia sp. HRI: GF111_17835
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Entry
GF111_17835 CDS
T10951
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
serh Serratia sp. HRI
Pathway
serh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GF111_17835 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serh03400
]
GF111_17835 (recD)
Enzymes [BR:
serh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GF111_17835 (recD)
DNA repair and recombination proteins [BR:
serh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GF111_17835 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
SH3_13
UvrD-helicase
PhoH
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_28
UvrD_C
T2SSE
CbiA
SRP54
ABC_tran
TrwB_AAD_bind
MukB
NPHP3_N
NTPase_1
AAA
ATPase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
UBI62716
LinkDB
All DBs
Position
3730946..3732796
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AA seq
616 aa
AA seq
DB search
MIALLEQAVALGVLRPLDVQFARVVANEDEPDILLAAACLSAEAGAGHVCLMLEQLQADT
LFEGRQPALALAVWEAAGRPDSARWQQRLAASAAVGDGSSATPLVLRGPRLYLQRMWQNE
GEVAAFIGGEGESLAVPEAELRIILDRLFGAASDEPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLDEGARLRIQLAAPTGKAAARLTESLGSASRQLALTPAQQALFPT
EAATLHRLLGAQPNSQRMRYHRGNRLHLDVLVVDEASMVDLPMMARLIAALPDRARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSDARAAELSRLTGCSLAGQQADAEAAVRDSLCLL
RKSYRFDARSGIGQLALAVNAGAGDRALAALNGSFGDVTGYALATSEEYQALLDACVAGY
RDYLRLTAEGADAAAVLAAFGRFQVLCALREGPFGVAGLNDRIELGLQRAGLIDRKPGVL
GRWYRGRPVMIGRNDSALGLFNGDIGITLPDEHGDLRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHFLPVLTRELVYTAITRARKQLSLYATEAVLLRAIRM
PTQRRSGLAERLQATE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcactgctggagcaggcggtagcgcttggcgtgctgcgcccgctggacgtgcag
ttcgcccgcgtggtggcgaacgaagacgagcccgatattttgctggccgccgcctgcctg
agcgcagaggcgggggccggtcacgtctgtctgatgctggaacagctgcaggcggacacg
ctgtttgaagggcgccagccggcgttggcgctggcggtgtgggaggcggccgggcgaccg
gatagcgcgcgttggcagcagcgtttggcggccagcgcagcggtcggggacggcagtagc
gctacgccactggtgctgcgcgggccgcgcctgtatctgcagcgcatgtggcaaaacgaa
ggtgaagtggcggcgtttatcggcggtgaaggcgagtcgttggcggtaccggaggctgag
ctgcgcattattctcgaccgcttgttcggcgcggcgagtgacgagcccgattggcagaag
atcgccgccgcagtggccgctacgcggcgtatcgcggtcatttccggcgggcctggcacc
ggtaaaaccaccaccgtcgccaagctgttggcggcgctggtgcagctggatgaaggcgcg
cgcttgcgcattcagctggcggcaccgaccggcaaggcggcggcgcgcctgacggagtcg
cttggcagcgccagccgtcaactggcgctgaccccggcgcagcaggcgctgttcccgacg
gaggcggcgacgttgcaccgtctgttgggggcgcaaccgaacagtcagcgcatgcgctat
caccgtggcaaccgactgcatttggatgtgctggtggtggatgaggcctcgatggtcgat
ctgccgatgatggcacgcctgattgccgcgttgcccgatcgggcgcgggtgattttcctc
ggcgaccgcgatcagctggcctcggtggaggccggcgcggtgctgggagatatttgccgc
tttgccgagcagggatacagcgacgcgcgtgccgcagagctgagccgcctgaccggctgt
tcgctcgcagggcagcaggccgatgcggaagcggcggtgcgcgacagcctgtgtctgctg
cgcaagagctaccgtttcgatgcccgttccggtatcggtcagttggcgttggcggtcaac
gccggtgcgggggatcgcgcgctggcggcattaaacggcagtttcggcgatgtcacgggc
tatgcgctggcgacgagcgaagagtatcaggcgctgttggatgcctgcgtggcgggctat
cgcgactatttgcggctgaccgccgaaggcgcggacgcggcggcggtgctggcggccttt
ggccgttttcaggtgctgtgcgcgctgcgtgaagggccgttcggcgtcgccggcttgaat
gatcgtattgagctcgggctgcagcgtgccggtctgatcgaccgcaaaccgggcgtgctc
ggccgctggtaccggggccggccggtgatgatcggccgcaacgacagcgcgctggggctg
ttcaatggggatatcggcatcacgctgccggatgagcacggcgatctgcgcgtgcatttc
caactgccggacggcagcatcaagtcggtgcagccgagccgtttgccggcgcatgaaacc
gcctatgccatgacggtgcacaaatctcagggatcggagtttgaccatacggtcctggtg
ttgccgaatcacttcctgccggtgctgacgcgtgagctggtctataccgcgatcactcgc
gcgcgtaagcagctctcgctgtatgccacggaggcggtgttgctgcgggccattcgcatg
ccgactcagcgtcgcagcggattggctgaacggctgcaggcgacggaataa
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