Serratia sp. HRI: GF111_21410
Help
Entry
GF111_21410 CDS
T10951
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
serh Serratia sp. HRI
Pathway
serh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GF111_21410 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serh03400
]
GF111_21410 (sbcB)
Enzymes [BR:
serh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GF111_21410 (sbcB)
DNA repair and recombination proteins [BR:
serh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GF111_21410 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GF111_21410 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GF111_21410 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UBI63369
LinkDB
All DBs
Position
complement(4474129..4475556)
Genome browser
AA seq
475 aa
AA seq
DB search
MSSKATATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPE
AVMITGITPQVARAKGVNEAEFTRQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHD
AMSDVYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDVADMTPLVHVSGMFGAARGN
TSWVSPLAWHPDNKNAVIMCDLAGDMTPLLTLSAEQLRERLYTRRDDLAPDQAPVPIKLV
HINKCPVLAPAKTLLPENAERLGIDRQACLQNLQLLKQHPEVREKVVALFAEAEPFKGSD
DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLAFSDGRMKELLFRFRARNYPNTLDD
AEQRRWLQHRQEALSAERVQSYLLQLESLYNLHEGDKEKTALLKALFDYGKELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagcaaggcaacggccacattttacattcacgactatgagaccttcggcaagagc
ccgtcgctggaccgcccggcgcagttcgccggcgtgcgcaccgatatggatttcaacatt
atcgaagaaccgctggtcatctactgcgccccggccgacgattacctgccggaaccggag
gcggtgatgatcaccggcatcacgccgcaggtggcgcgcgccaaaggcgttaacgaagcc
gaattcacccgccaaatccatcaggccttcagcgtggccggcacctgcattctcggttac
aacaacatccgcttcgatgacgaagtgagccgcaatatcttctatcgcaacttctacgat
ccctatgcctacagctggcaaaacggcaactcgcgctgggatctgctggatgtgatgcgc
gcctgctatgccctgcgcccggacggcatcgtctggccggaaaacgaagacggcttcccc
agcttccgcctggaacacctgacgcgcgccaacggcgtcgagcacacgcaagctcacgac
gcgatgtcggacgtttacgccactatcgcgatggccaagctggtcaagcaggcgcaacct
cggctgttcgacttcctattgcagcaccgcaacaaacacaagctgaacgccctgatcgac
gtcgccgacatgacgccgctggtgcatgtctccggcatgttcggcgcggcgcgcggcaac
accagctgggtgtcgccgctggcctggcacccggacaacaagaacgcagtgatcatgtgc
gatctggccggcgatatgacgccgctgctgacgctgagcgccgagcagctgcgtgaacgc
ctgtatacccgccgcgacgacctggcgccggatcaggcgccggtgccgatcaagctggta
cacatcaacaaatgcccggtgctggcgccggccaaaaccctgctgccggagaacgccgag
cggctgggcatcgatcgccaggcctgcctgcagaacctgcagctgctgaaacagcacccg
gaagtgcgcgagaaagtggtggcgctgttcgccgaagccgagccgttcaaaggctccgac
gacgtcgacgcccggttgtacgacggtttcttcagcgacgccgacaaggcggcaatgagg
attattcagcagaccaagccgcagaacctgccggcgctggatctggccttcagcgacggc
cgcatgaaagagctgctgttccgcttccgcgcgcgcaactacccgaatacgctggacgat
gccgagcagcgccgctggctgcagcaccgccaggaagcgttgagcgcggagcgcgtgcag
agttacctgctgcagctcgagtcgctgtataacctgcacgaaggcgacaaagagaaaacc
gccctgctgaaagcgctgttcgattacggcaaagagttggtggggtaa
DBGET
integrated database retrieval system
