Serratia sp. HRI: GF111_25105
Help
Entry
GF111_25105 CDS
T10951
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
serh Serratia sp. HRI
Brite
KEGG Orthology (KO) [BR:
serh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
serh03016
]
GF111_25105
Enzymes [BR:
serh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GF111_25105
Transfer RNA biogenesis [BR:
serh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GF111_25105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
R2K_3
PilZ
Motif
Other DBs
NCBI-ProteinID:
UBI64045
LinkDB
All DBs
Position
complement(5242894..5244828)
Genome browser
AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIPCRPVRELTH
NFQAGDWAVAEMRRHPLKGDRSFNADLTHFITEGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPAAALVREDLTALEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGEDIQF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDAIAQQITLLKRVCDARNAWRHRHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAVVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLDGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagttacttcattccgccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcgcgctttgtcggccgcgtgcaaaagcgcgacgaccgtctgtccatcgtg
cccgatcatccgttgctgaaagatgcgattccgtgccgcccggtgcgtgaattgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgtcacccgctgaaaggcgat
cgcagcttcaacgccgatctgacccactttatcaccgaaggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggagaaagaagcgccggaaatgcaggctctc
agcgagccggccgctgcgctggtgcgtgaagacctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgttgtatgtgaccgacaacggcgacggt
tcgctgcagttgaccatcgccatcgccgatccgaccgcctacgtcgagcaaggcagcaag
ctggacgatatcgcccgcgtgcgcgccttcaccaactacctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaacgagcgccgccag
gtgctggcttgccgcgtaaccatcgccgccgacggcgcgctgggcgaggatattcagttc
ttcgccgccgagatcgaatccaaagccaagctggtatacgacgaagtctccgactggctg
gaaggcattgccggctggcagccgccgagcgatgccatcgcgcaacaaatcaccctgctg
aagcgcgtttgcgacgcgcgcaacgcctggcgccaccggcatgcgctggtgttcaaagac
cgcccggactaccgcttcgtgctgggtgaaaaaggcgacgtactcgagatcgttaccgag
cagcgccgcagcgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccgtcgtgctgcgcgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgctctcgtcgagcaagcggtcaccgtattgcaggccaacggtgtggaagccgaagcc
gagaagctgctgaccctcgacggtttctgcgaactgcgccgccacctggatgcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgccgagatcagcaccacg
ccggggccacacttcggtctgggtctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgatatggtcaaccatcgcttgctgaaggcgatcatcaaccagcagccggca
gaaaagccgcaggatgacgtcacggtgcagctggcggaacgccgccgcctgaaccgcatg
gcggagcgcgacgtcggcgactggctgtacgcccgcttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagatcatcgacgtgacccgcggcggcctgcgcgtgcgcctg
ctggacaacggcgccgttgccttcatcccggcaccgtttattcacgcggtgcgcgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaagggtgaagtggtttaccgccag
agcgacaccttgcaggtcaccattgccgaagtgcgcatggaaacccgcagcgtgatcgcc
cgtccggcggcctga
DBGET
integrated database retrieval system
