Spiroplasma eriocheiris: SERIO_v1c02680
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Entry
SERIO_v1c02680 CDS
T03974
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
seri
Spiroplasma eriocheiris
Pathway
seri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERIO_v1c02680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seri03019
]
SERIO_v1c02680
Messenger RNA biogenesis [BR:
seri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SERIO_v1c02680
BRITE hierarchy
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GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
PRS2_N
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AKM53852
UniProt:
A0A0H3XLY8
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Position
284582..286249
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AA seq
555 aa
AA seq
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MSKISFFALGGLDERGKNLYCVEVDQDIFVFDAGTKNPERGILGIDVVISNFDYLKENRN
RIKGIFITKPSDECSEAVTYILKEVAIPVYGSKLTAHILNFHLQRFKVRGKEELFKVVNP
RDVIEFGPCKVEVIATTTNMPNSYGYALHTPNGVIIYTGDYMFDAKADPDFAMDMQHLTD
IATHNKVLLFLSEASSASRMDYTAPNHKIKSYIERAVKEAQGRLILACFDQDLHKINELF
DLVRENNINVGIYGQTLLEALKVINANNQMNLEGINLKTLHDVVDDEKSLIIVTGSGERL
YSRLIKIASGNDDILDIKETDTIILATPPNPGSELNHANVLDELARTVAKTIALSDRKIW
TMTASYEDIKLMTSILKPQYFIPVKGLYKDFVKAKQAANEAGVPVENIFLCDNGESVNFT
NGEFDKVIGKVKTSDLYVDGIGVGDIGAVVLNERKQLATDGVVIIGVSIDAKTKAITSLI
DTQMRGVIYIQENNDIFKKMQKVITDIIEKHHKKAIAGEMYDVNEVKNEIRSTVLSFVKL
ETGKTPIILAIVNEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattagtttttttgcccttggggggctagatgagcgcgggaagaatttatac
tgcgtggaagttgatcaagatatttttgtttttgatgcggggacaaaaaacccggaacgg
ggaattttaggaattgatgttgtgatttctaattttgattatttaaaagaaaatcgcaat
cgtattaaagggatttttattactaaaccttccgatgaatgttcagaagcagtgacatat
attttaaaagaagttgcaattccagtttatggaagtaaactgactgctcatattttaaat
tttcacctacaacgttttaaagtacggggaaaagaagaactatttaaagttgttaacccc
cgcgatgttattgaattcggaccttgcaaagtagaagttattgcaacgacaacaaacatg
ccaaatagttatggttatgctttgcatactcccaatggggtaattatttataccggggat
tatatgtttgatgcaaaagctgaccctgattttgcgatggatatgcaacatttaactgac
attgctacccataataaagtattattatttttatcagaagcttcatcagcctcacgaatg
gattatacggcgccaaaccataaaattaaaagttatattgaaagagcagttaaagaagca
cagggtcgcttaattttagcttgttttgatcaggacttacataaaataaatgaattattt
gatttagtgcgggaaaacaatattaatgttggaatttatggtcaaactttattagaggct
ttaaaagtaattaatgccaataaccaaatgaacttagaaggaattaatcttaaaacttta
catgatgttgttgatgatgaaaaatcattaatcatagtaacaggaagtggtgaacgttta
tatagtcggttaattaaaatcgctagtgggaatgatgacattttggatatcaaagaaacc
gataccattattttagcaaccccacccaacccggggagtgaactaaaccatgcgaatgtg
ttagatgagctagcccgtacggtggcgaaaacaattgccttatcagatcgtaaaatttga
acaatgaccgctagttacgaagatattaaattaatgacttcgattttaaaaccacaatat
tttattccggttaaagggttatataaagactttgtcaaagcaaaacaagctgctaacgaa
gccggggtgccagttgaaaacattttcttatgtgataatggcgaaagtgtcaactttaca
aacggtgaatttgataaagtaattggcaaagttaaaacttctgacttatatgttgatgga
attggtgttggtgacattggcgctgtggtattaaatgaacgaaaacaattggcaaccgat
ggggttgttattattggagtttcaattgatgcaaaaacaaaagccattacttccctaatt
gatacccaaatgcggggggtaatttatattcaagaaaataatgatatttttaaaaaaatg
caaaaagtaattaccgatattattgaaaaacaccataaaaaagcgattgctggagaaatg
tatgatgtgaatgaagttaaaaatgaaattcgtagtaccgtgttatcatttgttaaattg
gaaactgggaaaaccccaattattttagcaattgtaaatgaaatctaa
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