Spiroplasma eriocheiris: SERIO_v1c04400
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Entry
SERIO_v1c04400 CDS
T03974
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
seri
Spiroplasma eriocheiris
Pathway
seri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERIO_v1c04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seri03019
]
SERIO_v1c04400
03009 Ribosome biogenesis [BR:
seri03009
]
SERIO_v1c04400
Enzymes [BR:
seri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SERIO_v1c04400
Messenger RNA biogenesis [BR:
seri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SERIO_v1c04400
Ribosome biogenesis [BR:
seri03009
]
Prokaryotic type
rRNA helicases
SERIO_v1c04400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKM54019
UniProt:
A0A0H3XKQ2
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All DBs
Position
457173..458474
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AA seq
433 aa
AA seq
DB search
MNFNELNLKQELHRAILKTGYVKATEIQQKAIPVAIDNYDIIGKSHTGTGKTAAFVLPIL
HNLDVNLKKPQAIILCPTRELATQVLDQVRKYALFLHGVNATLLCGGSQIKSQIYALKKA
NVVVGTPGRIADHLNRHTLRLNNIKTIVLDEADEMLKMGFKKDIDLVFNNAPQNYQTLLF
SATMSKPVLEIANTYQKNPVSITVQKNTLEQNNINQYYIDTYGLNKEEVLIKLYQELKPK
LSIIFSNTKMYTEKIAKLLASQGIKSRVINGDKKQGDRYRSMQAFRNQEVSVLIATDVAA
RGIDVDGVDYVFNYDLPVELESYTHRIGRTARAGAKGTAITFINSRNSLNDLRKIEQYQK
KAINPYDISSYNLTKDFSKSHSSSMPKFKKAFDSKNNRSWNKPSKTKKEWNTKHSTTKNH
KDYQFDYRFKKTK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatgaattaaatttaaaacaagaattgcaccgagcaatcttaaaaacgggt
tatgtgaaggcaacggaaattcagcaaaaggcaattcctgttgccattgataattacgat
attattggaaaatcacataccggaaccggaaaaacagcggcctttgttttaccaatctta
cataatttagatgttaatttaaaaaaaccacaagcaataatattatgtccaacccgcgaa
ttagcaacccaagtgctagatcaggttcgtaaatacgcgttatttttacacggagtaaat
gcaacattattatgtggaggatcacaaattaaaagccaaatttatgctttaaaaaaagca
aatgtggtagttggaacccctggacggattgccgatcatcttaatcgtcatacattaaga
ttaaataatattaaaacaatagtattagatgaagcagatgaaatgttaaaaatgggcttt
aaaaaagatattgatttagtctttaataatgcgccccaaaattaccaaaccttattattt
tcagcaacaatgtcaaaaccagtgttggaaattgctaatacttatcaaaagaacccagtt
agtattacggttcaaaaaaatactctcgaacaaaacaatattaatcaatattacattgat
acgtatggactaaataaagaagaagtgttaattaagttataccaagaattaaaacccaaa
ttaagcattatcttttcaaatactaaaatgtatactgaaaaaattgctaaattattagct
agtcagggaattaagtctcgagttattaatggtgataaaaaacaaggtgaccgttatcgt
tcaatgcaagcttttcgaaatcaagaagttagtgtcctaattgccacagatgttgcagca
cgaggaattgatgttgatggagttgattatgtttttaactatgatttacctgttgaatta
gaaagttatacgcaccggattggacgaactgctcgtgctggtgctaaaggaacggcaatt
acttttattaattctcgtaatagtttgaatgatttacgtaaaattgaacaatatcaaaaa
aaagcaattaacccttatgatattagtagttataatttgacaaaagatttttcaaaatca
cattctagttccatgccaaaatttaaaaaagcatttgatagtaaaaataaccgttcatga
aataaaccgtcaaaaactaaaaaagaatggaatactaagcattcaactactaagaaccat
aaagattatcaatttgattatcgttttaaaaaaactaaataa
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