Serratia sp. MYb239: CLM71_00715
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Entry
CLM71_00715 CDS
T05477
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
serm
Serratia sp. MYb239
Pathway
serm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM71_00715 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serm03021
]
CLM71_00715 (rho)
03019 Messenger RNA biogenesis [BR:
serm03019
]
CLM71_00715 (rho)
Transcription machinery [BR:
serm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CLM71_00715 (rho)
Messenger RNA biogenesis [BR:
serm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLM71_00715 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AVJ15778
LinkDB
All DBs
Position
162247..163506
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTSSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaacacgccggtttctgacctgatcacactcggcgaaaat
atggggctggaaaacctggcccgcatgcgtaagcaggacattatcttttccattctcaag
cagcatgcgaaaagcggagaggatattttcggtgacggcgtgctggagatattgcaggat
ggatttggtttcctccgctccggagacagttcctacctcgcaggccccgacgacatctac
gtatcccctagccaaatccgccgcttcaacctccgtacaggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgaacgttactttgccctgctgaaggttaacgaagtcaac
tacgacaaaccggaaaacgcccgcagtaaaatcctgttcgaaaacctgacgccgctgcat
gccaactcgcgtctgcgtatggagcgcggcaacggttcaaccgaagacctgaccgctcgc
gtactggatctggcatcgccgatcggtcgcggccagcgcggcctgatcgtcgcaccgccg
aaagccggtaagaccatgctgctgcagaacattgcccagagcattgcctacaaccacccg
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtcaccgagatgcag
cgtctggtgaagggcgaagtgatcgcctcaaccttcgacgaaccggcttcccgccacgtg
caggttgcggaaatggtgatcgaaaaggccaagcgtctggttgagcacaagaaggacgtg
attatcctgcttgactccatcacccgtctggcgcgcgcttacaacaccgtggtgccggct
tccggcaaggtgctgaccggtggtgtggacgccaacgccctgcaccgtccgaagcgcttc
ttcggcgcggcgcgtaacgtggaagagggcggcagcctgaccattatcgccactgcgctg
gtggataccggctcgaagatggacgaagtgatttacgaagagttcaagggcaccggcaac
atggaactgcacctgtcgcgtaaaattgcggaaaaacgtgtcttcccggcgattgattac
aaccgctccggtacccgtaaggaagagctgctcaccagttctgaagagctgcagaagatg
tggatcctgcgcaagattatccacccgatgggggagatcgacgcgatggagttcctcatt
aataaattggcgatgaccaagaccaatgatgagttcttcgatatgatgaagcgctcataa
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