Serratia sp. MYb239: CLM71_00860
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Entry
CLM71_00860 CDS
T05477
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03420
Nucleotide excision repair
serm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLM71_00860
03430 Mismatch repair
CLM71_00860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_00860
Enzymes [BR:
serm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLM71_00860
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLM71_00860
MMR (mismatch excision repair)
Other MMR factors
CLM71_00860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
AAA_11
DUF4391
Motif
Other DBs
NCBI-ProteinID:
AVJ15803
LinkDB
All DBs
Position
189045..191207
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AA seq
720 aa
AA seq
DB search
MDVSDLLNSMNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMAV
TFTNKAAAEMRHRIEQLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRIIRALNVDEKQWPPRQAMWYINGKKDDGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRDRFTNILVDEFQDTNRIQYAWIRLLAGDR
ANVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSNILKAANTLIANN
DGRMGKNLWTEGAEGEPISLYCAFNELDEARFVVNRIKTWQENGGALNDCAILYRSNAQS
RVLEEALLQTAMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTLWQATRALLQDKVLAGRAASALQRFTELVDSLAHETADMPLHVQ
TDRVIRDSGLFLMYEQEKGEKGQARIENLEELVTATRQFSYQDEDQDLMPLQAFLSHAAL
EAGEGQADAYQDAVQLMTLHSAKGLEFRQVFIVGVEEGMFPSQMSLEEGGRLEEERRLAY
VGLTRAMEKLTLTYAETRRLYGKEVYHRPSRFIGEIPEECVEEVRLRASVSRPVKHQRMG
TPISENDTGYKLGQRVRHPKFGEGTIVNLEGSGEHSRLQIAFQGEGIKWLVAAYAKLETP
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttccgacctgctcaacagcatgaatgacaaacaacgtgaagccgtggcggcg
ccacgcagcaacctgttggtgctggcgggcgcgggaagcggcaaaacccgggtgctggtg
catcgcatcgcctggctgctggcggtagagaactgctcgccgtattcgattatggcggtc
accttcaccaacaaggcggcggcggagatgcgtcaccgtatcgagcagctgatcggcacc
agccagggcggcatgtggatcggcaccttccacggtctggcgcaccgtctgctgcgcgcc
caccatatggacgccaacctgccgcaggacttccagattctcgacagtgaggatcagctg
cggttgctcaaacgcattatccgcgcgctgaacgtggacgagaaacagtggccgccgcgt
caggcgatgtggtacatcaacggcaaaaaagatgacggcctgcgtccgcagcatattgaa
agctatggcaatccggtggaagccacctggctgcgtatctatcaggcctatcaggaggcc
tgcgatcgcgccgggctggtggactttgccgagctgctgctgcgcgcccacgagctgtgg
ctgaacaagccgcacatcctcaaccattaccgcgatcgcttcactaacatcctggtggac
gaattccaggataccaaccgcattcagtacgcctggatccgcctgctggcgggcgaccgg
gccaatgtgatgatcgtcggcgacgacgaccagtcgatctacggttggcgcggtgcgcag
gtggagaatattcagcgcttcctgaaagactttccgggcgccgaaaccatccgtctggag
cagaactaccgttcgaccagcaatatcctcaaggccgccaacacgctgatcgccaataac
gacggccgcatggggaaaaacctgtggaccgaaggggcggaaggggagccgatttcgctg
tactgcgcgttcaacgagctggatgaagcccgctttgtggtcaaccgcatcaaaacctgg
caggaaaacggcggcgcgctgaacgactgcgcaatcctctaccgcagcaacgcccagtcg
cgcgtgctggaagaggcgctgctgcaaaccgccatgccgtaccgcatttacggcggcatg
cgcttcttcgagcggcaggagatcaaagatgcgctggcctacctgcgtctgatcgccaac
cgtaacgacgatgcggcgtttgaacgcgtggtgaacacgccgacgcgcggcatcggcgac
cgtacgctggacgtggtgcgccagacggcgcgcgaccgccagctgacgctgtggcaggcc
acgcgcgcgctgctgcaggacaaagtcctggccggacgcgccgcctccgccctgcagcgc
ttcaccgagctggtggattcgctggcgcatgaaaccgcggatatgccgctgcacgtgcag
accgaccgggtgatccgcgactccggcctgttcctcatgtatgagcaggaaaagggtgaa
aagggccaggcgcggatcgaaaacctggaggaactggtgacggcgacgcgccagttcagc
tatcaggatgaagatcaggatttaatgccgctgcaggcatttttatcgcacgcggcgctg
gaagccggcgaagggcaggccgacgcctatcaggacgcggtgcagctgatgacgctgcac
tcggccaaagggctggagttccgccaggtgtttatcgtcggcgtggaagagggcatgttc
cccagccagatgtcgctggaagagggcggccggctggaagaagaacgccgtctggcctac
gtcggcctgacgcgggcgatggaaaagctgacgctgacctacgccgagacgcgccggctg
tacggcaaggaagtgtaccaccggccatcgcgctttatcggcgagatcccggaggagtgc
gtggaggaagtgcggctgcgcgccagcgtgtcgcggccggtgaaacaccagcgtatgggc
acgccaatcagcgagaacgataccggctacaaactgggtcagcgggtgcgccatccgaag
ttcggcgaaggcaccatcgtcaatctggaaggcagcggcgagcacagtcggctgcagatt
gctttccagggcgaaggcatcaaatggctggtggcggcctacgccaagctggagacgccg
taa
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