Serratia sp. MYb239: CLM71_01395
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Entry
CLM71_01395 CDS
T05477
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLM71_01395 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serm03021
]
CLM71_01395 (rpoB)
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_01395 (rpoB)
Enzymes [BR:
serm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLM71_01395 (rpoB)
Transcription machinery [BR:
serm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLM71_01395 (rpoB)
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLM71_01395 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AVJ15888
LinkDB
All DBs
Position
298305..302333
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALNYTSEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIKSIEVPVEYIAGKVVAKD
YIDTNTGELICSANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SQEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGVEADKLSQLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKADFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVMRLAENLKKGMPIATPVFDGARETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccacaa
gtgttggatgtgccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgccttccgttctgtattcccaatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagattcgtggtgtgacgttctctgcaccgctgcgcgttaaactg
cgcctggtcatctatgagcgagaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgaaattccgctcatgaccgaaaacggtacctttgttattaacggt
actgagagggttatcgtatcccagctgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcttcgggtaaagtgctgtataacgcacgcatcatcccttaccgc
ggttcctggttggacttcgagtttgacccgaaagacaacctgttcgtgcgtatcgaccgc
cgtcgtaaactgccggcctcgatcattctgcgcgcgctgaactacacctcagaacagatc
cttgacctgttcttcgagaaagttgttttcgaaattcgcgacaacaagctgcagatggag
ctggttcctgagcgtctgcgtggtgagaccgcttcgtttgatatcgaagccaacggcaaa
atctacgttgagaaaggtcgtcgcatcaccgctcgccatatccgtcagcttgaaaaagac
gatatcaagagtatcgaagtgccggttgagtacatcgcgggcaaagtggtcgccaaagac
tacatcgataccaataccggcgaactgatctgctccgccaacatggagctgtcgctggat
ctgctggcgaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcgcctacatctccgagacgctgcgtgtcgacccgaccaatgaccgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccaccgacgcgtgaagca
gcagaaagcctgttcgagaacctgttcttctccgaagaccgctacgatttgtccgcggtc
ggccgtatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttcaggtatcctg
agccaggaagacatcatcgatgtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgcatccgctccgtgggcgaaatggct
gagaaccagttccgcgtaggtctggtgcgcgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgacctggacaccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctcaagccagctgtcccagtttatggaccagaacaacccg
ctgtccgagatcacgcacaagcgtcgtatctccgcattgggcccgggcggtttgacccgt
gagcgcgccggcttcgaagtacgtgacgtacacccaacccactacggtcgtgtatgtcca
atcgaaaccccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggttacc
gatgaaatcaattacctgtccgccattgaagaaggcaactttgttatcgcccaggctaac
tccaacctggatgatgacggccgcttcgtggaagacttggtcacctgccgcagcaagggc
gaatccagcctgttcagccgcgatcaggttgactatatggacgtttccacccagcaggtt
gtatccgttggtgcgtctctgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggtgccaaccctgcgtgctgacaagccgctggtc
ggtaccggtatggaacgcgcagtagcggttgactccggcgtaaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggcatcgacatttataacctgaccaagtacacccgttccaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggcgagcctatcgagcgcggc
gacgtgctggcagacggcccgtctaccgatctgggtgaactggcgctgggtcagaacatg
cgtgtggcgttcatgccttggaacggttacaacttcgaagactccatcttggtgtccgaa
cgcgtagtccaggaagaccgcttcaccaccatccatattcaggaactggcttgcgtgtcg
cgcgacaccaaactggggcctgaagagatcaccgccgatatcccgaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtatacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggcgagacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtccgatgtgaaagactcttctctgcgtgtg
ccgaacggcgtttccggtaccgttatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaagcgtgcgctcgaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggtctgtttgcgcgtatccacgcggtgctggtt
gccggcggcgttgaagctgacaagctgagccaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggagcagctggccgagcagtacgacgaa
ctgaaagccgacttcgagaagaaactggaagccaagcgtcgtaagatcacccaaggcgac
gatctggcacctggcgtgctgaaaatcgtcaaggtgtacctggcggttaaacgtcagatc
cagccgggtgataaaatggcaggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggcg
gcgaaaggcattggtgagaagatcaaccagatgctcaagcagcagcaggaagtggccaaa
ctgcgtgaattcatccagaaagcctacgatctgggtgacgacgtttgccagaaagtcgac
ctgaacaccttcagcgatgacgaagtgatgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgcaacgccggtgttcgatggtgcgagagagactgaaatcaagaaactgctggaa
atgggcggtatcccgacctccggtcagattacgctgttcgatggccgtaccggcgagcaa
tttgagcgccaggtaaccgtaggctatatgtacatgctgaaactgaaccacctggttgac
gataaaatgcacgctcgttcaaccggttcttacagcctggttacgcagcagcctctgggt
ggtaaagcgcagttcggtggccaacgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcttataccctgcaggaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccgtatggaaccgggcatgccg
gaatccttcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgaactggaa
gacgagtaa
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integrated database retrieval system
