Serratia sp. MYb239: CLM71_01400
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Entry
CLM71_01400 CDS
T05477
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLM71_01400 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serm03021
]
CLM71_01400 (rpoC)
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_01400 (rpoC)
Enzymes [BR:
serm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLM71_01400 (rpoC)
Transcription machinery [BR:
serm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLM71_01400 (rpoC)
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLM71_01400 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVJ15889
LinkDB
All DBs
Position
302450..306673
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEVKDAEGEWTTQTSLVDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRIMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEEVLKPGTADILVPRNTLLNEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNSGSIKL
SNAKFVVNSSDKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDNAEVTGGETVANW
DPHTMPVVSEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVQIGSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEADGKLGATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLNGNGDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggtttgttctgtgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggcgttatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttcgccaaccgcgcatatctggttcctgaaatcgctg
ccgtcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtgctgtac
ttcgaatcctacgtggtggttgaaggcggtatgaccaacctcgagcgccgtcagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcagaagcgatccaggccctgttgaaaaacatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgaccagcgatctgaacgatctgtatcgtcgcgtcatcaaccgtaacaaccgtttgaag
cgcctgctggatctggccgcgccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggccgttccgttatcaccgttggcccatac
ctgcgtctgcaccagtgtggcctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggcctggccaccactatcaaagccgccaagaaaatg
gttgagcgcgaagaagccgtcgtctgggatatcctggatgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcttttgaaccggta
ctgatcgaaggtaaagccatccagctgcacccgctggtttgtgcggcgtataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtctccggcgaacggcgagccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgagtggtcctaaagaagccgagcgtatttaccgcgctggc
ctggcctcgctgcatgcgcgcgttaaagtgcgtatcactgaagaagtgaaagatgcggaa
ggcgagtggacgacgcagaccagcctggtggacaccaccatcggccgcgccatcctgtgg
atgatcgtgccgaagggcctgccgtactctatcgttaaccagccgttgggcaaaaaagcg
atctccaagatgctgaacacctgttaccgcatcatggggctgaaaccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttcaggcgcttccgtaggc
atcgacgacatggttatcccggcgaagaaagccgagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaggttatcgatatctgggctgcggccaacgaacgcgttgctaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaggtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggcctgatggcgaagccggacggttccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacgcgtcgtctg
gttgacgttgcgcaggatctggtggtgaccgaagacgactgtggcacccacgacggcatc
ctgatgaccccggtcatcgaaggtggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggtcgtgtgaccgctgaagaagtgttgaagccgggtacggcggatattctggttccgcgt
aacaccctgctgaacgaaaaatggtgtgatctgttagaagaaaactccgttgacagcgtg
aaggttcgctctgtcgttagctgtgaaaccgacttcggcgtgtgtgcaaactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcggca
cagtccatcggtgagccgggtacccagctgacgatgcgtaccttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacagcggtagcatcaagctg
agcaacgccaaattcgttgtgaacagcagcgataagctggtgatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggc
gccgtgatggcgaaaggtgacaacgcggaagtgaccggcggcgagaccgttgcgaactgg
gatccgcacaccatgccggtagtcagtgaagtgagcggtttcattcgctttgccgatatg
atcgacggccagacgattactcgtcagaccgacgaactgaccggtctgtcatcgctggtg
gttctggattctgcagaacgtaccgcgggcggtaaagatttgcgtcctgcgctgaaaatt
gttgacgccaacggcgacgacgtcctgatcccaggcaccgatatgcctgctcagtacttc
ctgccgggcaaagcgattgttcagctggaagacggcgtacagatcggttcgggtgatacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggatctgttcgaagctcgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgccgtctggttatcactccgctg
gacggcagcgatgcctacgaagagatgattccaaaatggcgtcagctcaacgtgtttgaa
ggcgaacgcgtcgaacgtggtgatgtggtttccgatggtccagagtcgccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttagcgctggtggctctgagttcctggaaggcgaacaggct
gaagtgtctcgcgtcaagattgccaaccgccagctggaagcagatggcaagttgggtgca
accttcgcgcgcgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgctgcatcgttccaggaaacgacgcgcgttctcaccgaagcggcggttgccggtaag
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggaccgcatgcgccgtcgtgcacagggcgaagcaccggtt
gttccgcaggtgagcgcggaagaagcgactgccaacctggccgaattgctgaatgcaggc
ctgaacggtaacggcgacgagtaa
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