Serratia sp. MYb239: CLM71_02060
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Entry
CLM71_02060 CDS
T05477
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM71_02060 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serm03019
]
CLM71_02060 (pnp)
03016 Transfer RNA biogenesis [BR:
serm03016
]
CLM71_02060 (pnp)
Enzymes [BR:
serm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CLM71_02060 (pnp)
Messenger RNA biogenesis [BR:
serm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLM71_02060 (pnp)
Transfer RNA biogenesis [BR:
serm03016
]
Prokaryotic type
tRNA degradation factors
CLM71_02060 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AVJ16008
LinkDB
All DBs
Position
437076..439196
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AA seq
706 aa
AA seq
DB search
MLTPTIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDHFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTVDELKESRLDLVVA
GTAGAVLMVESEAEVLSEDQMLGAVVFGHEQQQVVIDNINSLVAEVGKPKWDWQPTPVNE
ALQARVAELAQSRLGDAYQITEKQERYAQVDAIKEDVTAALLEQDETLDAADIQDALGDL
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPED
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISQFAPRIHTMKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATASEAAAPAAPEAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgacaccgactattcgcaaattccagtatggccagcataccgtcaccattgagacc
ggtatgatggcgcgtcaggcgactgccgccgttatggtaagcatggacgacactgccgta
ttcgttacggttgtaggccagaaaaaagccaagcctggccagagcttcttcccgctgacc
gtgaactatcaggagcgtacctacgccgccggccgtatcccgggcagcttcttccgccgt
gaaggccgtccaagcgaaggcgaaaccctgacttcccgtctgattgaccgtccaatccgc
ccactgttcccggatcacttcctgaacgaagtgcaggtgattgcgaccgtggtttccgtt
aacccgcaggttaacccggatatcgtggcgatgatcggcgcatctgcggcactgagcctg
tcaggcattccgttcagtggcccaatcggcgcagcgcgcgtgggttacatcaacgaccag
tatgtactgaacccgaccgttgacgagctgaaagagagccgtctggatctggtggttgcc
ggtaccgctggcgcagtgctgatggttgagtccgaagccgaagttctgagtgaagatcag
atgctgggcgccgtggtgtttggccacgagcagcagcaggtggttatcgacaacatcaac
tcactggttgctgaagtcggcaaacctaagtgggactggcagccgaccccggttaacgaa
gcgctgcaggcgcgcgtagccgaactggcgcaaagccgtctgggtgatgcttaccagatc
actgaaaagcaggagcgctacgcacaggttgacgccatcaaagaagacgtcaccgccgcg
ctgctggagcaagacgaaacgctggacgctgcagacattcaggatgccctgggcgatctg
gagaagaacgtggtgcgtagccgcgtactgcgcggcgagccgcgtatcgacggccgtgaa
aaagacatgatccgtggtctggacgtgcgtaccggcgtgctgccgcgtacccacggttcc
gcgctgttcacccgtggtgaaacgcaggctctggttaccgccactctgggtaccgcgcgc
gacgcgcagaacctggatgagctgatgggcgaaaagaccgacagcttcctgttccactac
aacttccctccgtactccgtgggcgaaaccggcatggtcggttcacctaagcgtcgtgaa
attggtcacggtcgcctggcgaaacgcggcgtattggctatgatgcctaaaccggaagat
ttcccgtacaccgttcgcgtggtgtccgagatcactgaatccaacggttcttcttccatg
gcttccgtctgtggcgcatctctggcgctgatggatgcaggtgtgccaatcaaggccgcg
gttgcaggtatcgccatgggtctggtaaaagaagacgaaaactttgtggtactgtcggac
attctgggcgatgaagatcacctgggcgacatggacttcaaagtggccggtagccgtgac
ggcatcaccgcgctgcagatggatattaaaattgaaggcatcacccgcgaaatcatgcag
gtggcgctgaaccaggccaagggtgcgcgtctgcacattctgggcgtgatggaacaggcg
atcagcacgccgcgcggcgatatctctcagttcgcaccgcgtatccacaccatgaagatc
aatccggacaaaattaaggatgtgatcggtaaaggcggctctgtgattcgtgcgctgacc
gaagagactggcactaccattgaaatcgaagatgatggtacagttaaaatcgcagcgacc
gacggtgagaaagcgaaatacgcgattcgtcgtattgaagagatcaccgccgagatcgaa
gttggccgcatttaccagggtaaagtgacccgtatcgttgactttggcgcctttgtggcc
atcggcggcggtaaagaaggcctggtgcatatttctcagatcgccgacaagcgcgttgag
aaagtgaccgactatctgcagatgggccaggaagtgccggttaaggtgctggaagttgat
cgccagggccgtgtgcgcctgagcatcaaggaagccactgcctctgaagcggcggcgcct
gctgcgcctgaagcagaataa
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