Serratia sp. MYb239: CLM71_06115
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Entry
CLM71_06115 CDS
T05477
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM71_06115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serm03019
]
CLM71_06115
Enzymes [BR:
serm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLM71_06115
Messenger RNA biogenesis [BR:
serm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLM71_06115
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVJ16736
LinkDB
All DBs
Position
1284106..1285473
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AA seq
455 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSSKPSAVKGRRPVRALILTPTRELAAQIGENVRAYSQHLRLRSLVVFGGVSINPQMM
KLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAGKLLHNPASVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQQRGGRGNGNPGRGNGNGGGQRAANGGGQ
RDNRGNGAQRARPQGEGKPRSGAPARRPRRSRPAE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttgagtgccgaaatcctgcgtgccgttgaagaacagggc
tatcgcgaacctacgccgattcaacgtcaggcgatcccggtagtgctggaaggacgcgac
ctgatggccagcgcccagaccggcaccggcaaaaccgccggctttaccctgccgctgctg
cagctgctgagcagcaaaccgagcgcggtgaaaggccgccgcccggtgcgcgcgctgatc
ctgacgccgacccgtgaactggcggcgcaaatcggcgagaacgtccgcgcctacagccag
cacctgcgcctgcgctcgctggtggtgttcggcggcgtcagcatcaacccgcagatgatg
aaactgcgcggcggggtggatattctgatcgccacgccgggccgcctgctggatctggaa
catcagaatgccgtcgatctgtccaacgtggaaatcctggtgctggacgaagccgaccgc
atgctggatatgggctttattcacgatattcgccgcgtgctggccaagctgccggcgaaa
cgtcagaacctgctgttttccgccaccttctccgacgatatcaaggcgctggccggcaaa
ctgctgcacaacccggcatcggtggaagtggcgcgccgcaacaccgcctccgagcaggtg
acgcagcacgttcactttgtcgacaagaagcgcaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggcgtcaggtgctggtgtttacccgcaccaaacacggcgccaaccat
ctggccgagcagctgaataaagacggcatcaccgctgccgcgatccacggcaataaaagc
cagggcgcacgtacccgggcgctggctgattttaaagacggccgtattcgcgtgctggtg
gcgaccgatatcgcggcgcgtggtctggatatcgaccaactgccgcacgtggtgaactat
gagctgccgaacgtgccggaagactacgtgcaccgcatcggccgcaccggccgtgcggaa
cgcaccggcgaggcgatatcgctggtgtgcgtcgacgaacacaaactgctgcgcgatatc
gaacgcctgctgaagcgcgaaattccgcgcatcgccctgccgggttatgagccggatccg
accatcaaggcggaaccgatcatcaacggccgtcagcagcgcggcggccgcggtaacggt
aacccgggacgcggcaacggtaacggcggcggacagcgcgcggccaacggcggcggtcag
cgagacaaccgcggcaacggcgcccagcgcgcccgtccgcagggcgaaggcaaaccgcgc
agcggcgcgccggcccgtcgtccgcgccgtagccgaccggcggagtaa
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