Serratia sp. MYb239: CLM71_09040
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Entry
CLM71_09040 CDS
T05477
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLM71_09040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serm03019
]
CLM71_09040
03009 Ribosome biogenesis [BR:
serm03009
]
CLM71_09040
Enzymes [BR:
serm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CLM71_09040
Messenger RNA biogenesis [BR:
serm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLM71_09040
Ribosome biogenesis [BR:
serm03009
]
Prokaryotic type
rRNA processing factors
CLM71_09040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AVJ17267
LinkDB
All DBs
Position
complement(1900006..1903350)
Genome browser
AA seq
1114 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNSYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKMYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQAGVKAVIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPPEEIPMERKRPEQPALASFSLAADAPP
PAAEPATAKKPTASQPAAPAAAPGLLSRFFSGLKSLFAGEEPQPVAEEKPVETAKSSGGE
NRRQDRRNQRRQGSGRKERGERSERGERGERGERSDRNERGERKERGEGRERDNREGRER
DNRESRDEQRRNRRNAANNAPVASDAPVDEAAKAQREEQQQQRREQRAERQRRRQEEKRQ
AQQEAKQQEKATVAPVAAAEEDKEERHQQPAQRRQRRQLSQKVRILSAEEELQRAAEELL
APKAPAETAEEAKAPAADDSVKLLPETVATTGEEDTQENRNGENGMPRRSRRSPRHLRVS
GQRRRRYRDERYPTQSPMPLTAAFASPEMASGKVWIGYPVTTAAQAVEETEVKRQPSVTA
EQQPVAEVAASVAAPAIVAAQEEVQAPVAAANVESAESAPVAAPLQEEAKAPQPAAVEAP
ADVASDVQPAAEATPAPAQPEEQPVPAAAEPAADETAVEEAEEKAVAAEKAVEEPTIAAP
AEAVVSEPAPQTASDEAAAAPAPVIAAQPAETRYKHIASAPMTKAPAPAYQPEAPKHSDW
QRPAFDFEGKGSAGGHSAVNQATAPATKPQPVND
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaacaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtacgatttggatatcgaaagcccgggtcatgagcagaaaaaagcgaac
atttacaaaggcaaaatcacccgtatcgaaccaagtcttgaagcagcgtttgttgactac
ggcgcagaacgacatggtttccttcctcttaaagaaatcgcccgcgaatacttccctaac
agctattcctcccatggccgccccaacatcaaagatgtgctgcgcgaaggccaggaagtg
atcgtacaggttgataaagaagaacgcggcaacaaaggcgccgctctgaccacctttatc
agcctggccggcagctatctggtgttgatgccgaacaacccgcgcgccggcggtatttcc
cgccgcatcgagggcgacgaccgcaccgaactgaaagaagcgctctcttcactgcaactg
cccgacggcatgggcctgatcgtccgcaccgccggcgtcggcaaatccgccgaagcgctg
cagtgggacctgtcgttccgtctcaagcactgggaagccatcaagaaagccgccgaaggc
cgccctgcaccgttcctgattcaccaggaaagcaacgttatcgtccgtgccttccgcgat
tacctgcgtcctgacatcggtgaaatcctgatcgataacccgaaaattctcgatctggcg
aaagaacacattgccgcgctgggacgcccggacttcagcagcaaaattaaaatgtacagc
ggtgaaatcccgttgttcagccactaccagattgagtcgcagatcgaatccgctttccag
cgtgaagtgcgcctgccttccggcggttccatcgttatcgacaccaccgaagcgctgacc
gcgatcgacatcaactccgcacgcgccacccgcggcggcgatatcgaagaaaccgcattc
aacaccaacctggaagcagcggatgagattgcccgtcagctgcgcctgcgcgaccttggc
ggcctgatcgtcatcgactttatcgacatgacgccggtacgccaccagcgcgaagtagag
aaccgcctgcgtgatgcggtgcgtcaggatcgcgcacgcattcagatcggccgtatttcc
cgcttcggcctgctggagatgtcccgtcagcgcctcagcccgtcgctgggcgagtccagc
caccacgtctgcccgcgctgtaacggcaccggcaccgtgcgtgacaacgaatcgctggcg
ctgtccatcctgcgtctgattgaagaagaagcgctgaaggaaaacaccaaagaggtgcac
gccatcgtgccggttcaggttgcttcttacctgctgaacgaaaaacgtgaatccgtcagc
gccatcgaaaaacgtcaggccggcgtgaaagccgtcatcgtgccgaacgatcagatgcaa
accccgcattactcagtactgcgcgtgcgtaaaggcgaagaaacgccaaccctgagctat
ctgctgccgaagctgcatgaagaagagatggcgcagccgccggaagagatcccgatggaa
cgtaagcgtccggaacaaccggcgctggcttccttctctctggccgccgatgcgccgccg
ccggcggctgaacccgccacggcgaagaaaccgaccgccagccagccggctgcgccagcc
gcagcgccaggcctgctcagccgcttcttcagcggtctgaaatcgctgttcgccggtgaa
gagccgcagcccgttgcggaagagaaaccggttgaaaccgcgaaaagcagcggcggcgag
aaccgtcgtcaggatcgtcgtaatcagcgtcgtcagggctctggccgtaaagagcgcggt
gaacgtagcgagcgcggtgaacgtggcgagcgtggtgaacgtagcgatcgcaatgagcgt
ggtgagcgtaaggagcgcggtgaaggccgtgaacgcgacaaccgtgaaggacgcgaacgc
gataaccgcgaatctcgtgacgagcagcgccgcaatcgccgtaacgccgcgaataacgcg
ccggtagccagcgatgcgccagttgatgaagccgcaaaagcgcagcgcgaagagcaacag
cagcagcgccgcgagcagcgcgccgagcgtcagcgtcgtcgtcaggaagagaagcgccag
gcacagcaagaagcgaagcagcaggagaaggccaccgtcgcaccggtagctgccgctgaa
gaagataaggaagagcgccatcagcaaccggctcagcgtcgtcaacgccgccagctgtcg
cagaaggtgcgtatcctgtcagcagaagaagaactgcagcgcgctgcggaagagctgctg
gcgccaaaagcaccggcggaaaccgctgaggaagccaaagcgcctgcggcagacgacagc
gttaaactgctgccggaaaccgtagccaccaccggcgaagaagacacgcaggaaaaccgt
aacggtgaaaacggcatgccgcgccgctcacgtcgttcaccgcgtcatctgcgcgtgagc
ggccagcgtcgtcgtcgttaccgcgacgagcgttatccgacccagtcgccgatgccgctg
acggctgcgtttgcctctccggaaatggcgtctggcaaggtctggatcggttaccctgtc
acaacagctgcgcaagcggttgaagagactgaggttaagcgccagcctagcgtcacagct
gaacagcagccggtagcggaagttgccgccagcgttgctgcgccggcaatcgtcgccgcc
caggaagaggttcaggctccagtcgccgccgctaacgtcgaatcggctgaaagtgcgcca
gttgccgcgccactgcaggaagaggccaaagcgccgcagccggcagccgttgaggcaccg
gccgacgtcgccagcgatgttcagcctgcggctgaggccacaccggccccggctcagcct
gaagagcagcctgtgcctgccgccgctgaaccggcagccgacgaaactgccgttgaagaa
gctgaagaaaaagcggtagctgcagagaaggccgttgaggaaccgaccattgcggcgcca
gccgaagcggtcgtcagcgaaccagctccgcagacggcaagcgatgaggcagcggcagcc
cctgcgccagtcatcgcggctcagccggcagagacgcgttacaagcacatcgccagcgca
ccgatgaccaaagcgcctgccccggcttatcagccggaagcgccgaagcacagtgactgg
cagcgtccggcctttgattttgaaggcaaaggcagcgccggtggccactcggcggtaaac
caggccaccgccccggccaccaagccacagccggttaacgattaa
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