Serratia sp. MYb239: CLM71_13905
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Entry
CLM71_13905 CDS
T05477
Symbol
nirD
Name
(GenBank) nitrite reductase (NAD(P)H) small subunit
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
serm
Serratia sp. MYb239
Pathway
serm00910
Nitrogen metabolism
serm01100
Metabolic pathways
serm01120
Microbial metabolism in diverse environments
serm01310
Nitrogen cycle
Module
serm_M00531
Assimilatory nitrate reduction, nitrate => ammonia
serm_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
CLM71_13905 (nirD)
Enzymes [BR:
serm01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
CLM71_13905 (nirD)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pyr_redox_2
Rieske_2
Pyr_redox
NIR_SIR
Rubredoxin_C
Fer2_BFD
NIR_SIR_ferr
Pyr_redox_3
NAD_binding_8
GIDA
FAD_binding_3
AlaDh_PNT_C
FAD_oxidored
FAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AVJ18148
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All DBs
Position
complement(2893856..2897998)
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AA seq
1380 aa
AA seq
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MATQQRLVVIGNGMAGMRLVETLCQLAPQRYAITVIGEEPRGNYNRILLSPLLAGEKSFD
DALLHPLAWYRQHGVALRHGETALALDRQTRRVITRAGSVAYDQLVFATGSRPWLPPTPG
IELPGVYGFRTLDDVEAMLGRCRPGARALVVGGGVLGIEAAAALAARGVRSAVVHRGEWL
MERQLDARAAGMLQNNLAARGIDSHLATQVSAFYGDGELQGARLSDGRELACDLAVIAAG
VRPAIALAQQAGLACQRGIMVDERQQTDDPAIYAVGECSQLGETTFGLVAPCWQQATLLA
QRLAGQASEPFRPAPLNTRLKVSGIDMLCAGEVQPAEGDEVHYAEDPQAQHYRRLLLRDG
VLHGVLLYGDAGDAQFYLQRLGRPVTDPAALLFGRTECEAAVTANERKSDMHKPVLLVAG
HGMVGHHFLEQLVARELHQRYHIVVFGEEPVAAYDRVHLSEFFAGRSAQSLSVVEDGFFD
RYGIELRLGLRVCAIDRQRKCVTDSEGRETAYDQLVLATGSYPFVPPIPGNQRPDCLVYR
TLDDLAAIAASAESARVGVVVGGGLLGLEAANALRQLGLETHVVEFAPRLMGVQLDDGGA
AMLRKKIEALGVNVHTGKETRAIEDGLLHRHCMHFADGGRLEADLILFSAGIRPRDQLAR
DADLALGERGGIVIDDQCRTSDAAIFAIGECALWNGQIFGLVAPGYQMARTLADTLAGGV
AQFCGADMSTKLKLLGVEVASIGDAHGRSAGSQSYSWVDGPAEVYKKLVVSADGKKLLGA
VLVGDSAEYSTLLQMMLNDLPLPAAPESLILPAAAGGAPKGLGVAALPAGAQICSCHNVS
KGDIGAAVEQGCGDLAAVKSCTKAGTGCGGCAALVKQVLEHELAQRGVEVKKDVCEHFAY
SRQELYHLVRVGNIRSFDELMAKHGRGHGCEICKPLAASILASCWNEYLLEPQHLPLQDT
NDRFFANIQKDGTYSVVPRVPAGEITPQGLIAIGQIAQRYQLYTKITGGQRVDMFGARLE
QLPEIWQQLVEAGFETGHAYGKSLRTVKSCVGSSWCRYGVQDSTGLAIELENRYKGLRSP
HKIKMAVSGCTRECAEAQSKDVGVIATDKGWNLYLCGNGGMKPRHADLFASDLDSATLIR
TIDRFLMFYIRTADRLQRTSTWMDNLEGGLDYLRQVVLEDSLGIAAELENEMQTVIASYQ
CEWQTTLASPEKLRQFRAFVNSDQPDEAVVWQPERGQRRPAEARAQVIEVQPAREPEAQW
EEVCALGDIPPHSGIAARVAGRQVALFHLPGAGVYALANREPGSSANVLARGLLGDAAGE
PVVISPLYKQRFRLRDGVSLEDSNVRLEVWPVRVDQERVWVYGEPGPLQPQAQEMAGAAL
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcagcaacgcctggtggtgatcggcaacggcatggcgggcatgcggctggtg
gagacgctgtgccagctggcgccgcagcgctatgccatcacggtgatcggcgaggagccg
cgcggcaactacaaccgtattctgctgtcgccgctgctggcgggcgagaaatccttcgac
gacgcgctgctgcatccgctggcgtggtatcgccagcatggcgtcgcgctgcggcatggc
gaaacggcgctggcgctggatcggcagacgcggcgggttatcacccgtgcgggcagcgtc
gcctatgaccagctggtgttcgccaccggttcgcggccgtggctgccgccgacgccaggg
attgaactgcccggcgtgtacggcttccgcacgctggatgacgtcgaggcgatgctcggc
cgctgccgtccgggggcgcgggcgctggtggtgggcggcggcgtgctggggattgaggcg
gcggcggcgctggccgcccgcggcgtgcgcagcgcggtggtgcaccggggcgagtggctg
atggagcgtcagttggatgcgcgcgcggcgggcatgctgcagaacaacctggcggcacgc
ggcatcgacagccatctggcgacgcaggtcagcgccttttacggcgacggcgaactgcag
ggcgccagactgagcgacgggcgcgaactggcctgcgatctggcggtcattgccgccggc
gtgcggccggccatcgcgctggcgcagcaggccgggctggcctgtcagcgcggcatcatg
gtggacgagcgccagcagaccgacgatccggcgatctacgccgtgggcgagtgcagccag
ctgggggaaaccaccttcggtctggtggcgccgtgctggcagcaggcgacgctgctggcg
cagcggctggccgggcaggcgagtgaacccttccggcccgcgccgctgaacactcgctta
aaggtcagcggcatcgacatgctgtgcgccggcgaggtacagccggcagagggcgatgag
gttcattacgccgaagatccgcaggcgcagcactaccgccgcctgctgctgcgcgacggc
gtactgcacggcgtgctgctgtatggcgacgccggcgacgcgcaattttatctgcaacgg
ctgggccgcccggtgacggatccggcggcgctgctgttcggcaggacagagtgtgaagcc
gcagtgacggcgaacgagaggaaaagcgatatgcacaaacccgtattgttggtcgccggt
cacggcatggtgggacatcacttcctggaacagctggtggcgcgcgagctgcatcagcgc
taccacattgtggtgtttggcgaagaaccggtggcggcgtatgaccgcgtgcacctgtcc
gaattctttgccggccgcagcgcgcagtcgctgtcggtggtggaagatggcttttttgac
cgctacggcattgaactgcggctgggcctgcgggtatgcgccatcgaccgtcagcgcaag
tgcgtcacggatagcgaagggcgggaaaccgcctatgaccaactggtgctggctaccggt
tcttatccgtttgtgccgccgatccccggtaaccagcggccggactgtctggtgtaccgc
acgctggacgatctggcggccattgcggccagcgcggagagcgcccgggtcggcgtggtg
gtgggcggcggcctgctggggctggaggcggccaacgcgttgcgtcagctggggctggaa
acccacgtggtggaattcgcgccgcgcctgatgggcgtacagttggatgacggcggcgcc
gccatgctgcgtaaaaaaatcgaggcgctgggggttaatgtgcataccggcaaggaaacc
cgggcgatagaggacggtttgttacaccgtcactgcatgcattttgccgacggcgggcgg
ctggaggccgacctgatcctgttttccgccggcatccgcccgcgcgaccagctggcgcgg
gatgccgatctggcgctgggtgaacgcggcggcatcgtgattgatgaccagtgccgcacc
agcgatgcggcgattttcgccatcggcgagtgcgcgctgtggaacgggcagattttcggt
ctggtggcgccgggctatcagatggcgcgcacgctggcggatacgctggccggcggcgtc
gcgcagttttgcggtgcggatatgagcaccaagctgaaactgttgggggtggaggtggcg
tcaatcggcgacgcccacggccgcagcgccggcagccagagctacagctgggttgacgga
ccggcggaggtctacaaaaagctggtggtttccgccgacggcaaaaaactgctgggggcg
gtgctggtgggcgacagcgccgaatacagcacgctgttgcagatgatgctgaacgatctg
ccgctgccggcggcgccggaaagcctgatcctgccggccgccgccggcggggcgccaaaa
gggctgggggtggccgcattgccggccggcgcgcagatctgctcctgccataacgtcagc
aagggcgatatcggcgcggcggtggaacagggctgcggcgatctggcggcggtgaaaagc
tgcaccaaggcgggcaccggctgcggcggctgcgcggcgctggtgaaacaggtactggag
catgaactggcgcagcgcggcgtcgaggtgaaaaaagacgtctgcgaacatttcgcctat
tcccgccaggagctgtaccacctggtgcgggtcggtaatatccgcagcttcgacgaactg
atggcaaaacatggccgcggccacggctgcgaaatctgcaagccgctggcggcgtcgatt
ctggcctcctgctggaatgaatacctgctggagccgcagcacctgccgctgcaggatacc
aacgatcgcttcttcgccaatattcaaaaggacggcacttattcggtcgtgccgcgggta
ccggccggcgaaatcacgccgcaggggctgatcgccatcggacagatcgcccagcgctat
cagctgtataccaaaataaccggcggccagcgggtggatatgttcggcgcgcgcctggag
caactgccggagatctggcaacagctggtggaggccggttttgaaaccggccacgcctac
ggcaaatcgttgcgcacggtgaaatcctgcgtcggttccagctggtgccgctatggcgtg
caggattctaccgggctggcgattgagctggagaaccgctacaaggggctgcgttcgccg
cacaaaatcaagatggcggtatcgggctgcacgcgtgaatgcgccgaagcgcagagcaaa
gacgtgggggtgatcgccaccgacaagggctggaacctctacctgtgcggcaacggcggc
atgaaaccgcgccatgccgatctgtttgccagcgatctggacagcgctacgctgatccgc
accatcgaccgtttcctgatgttctatatccgcaccgctgaccggctgcagcgcaccagc
acctggatggataatctggagggcgggctggactatctgcggcaggtggtgctggaggac
agcctcggcatcgccgcggaactggaaaacgagatgcagacggtgatcgccagctaccag
tgcgaatggcaaaccacgctggccagcccggagaaactgcgccagttccgcgcgttcgtc
aacagtgaccagccggacgaggcggtagtgtggcagccggagcgcggacagcgccgcccg
gccgaggcgcgcgctcaggtgattgaggtgcagccggcgcgggaacctgaggcgcagtgg
gaagaggtgtgcgcgctgggcgatattccgccgcacagcggcatcgccgcccgggtggcc
ggacggcaggtggcgctgtttcacctgccgggcgccggcgtgtacgcgctggccaaccgc
gagccgggcagttcggccaacgtactggcgcgcggtctgctgggtgacgcggcgggcgag
ccggtggtgatctcgccgctgtacaagcagcgcttccgcctgcgtgacggcgtcagcctg
gaggacagcaatgtgcgcctcgaggtctggccggtgcgggtggatcaggagcgggtgtgg
gtgtacggcgagcctggcccgctgcagccacaggcgcaggagatggcgggggcggcgtta
tga
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