Serratia sp. MYb239: CLM71_15860
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Entry
CLM71_15860 CDS
T05477
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLM71_15860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_15860
Enzymes [BR:
serm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
CLM71_15860
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CLM71_15860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AVJ18501
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All DBs
Position
3295343..3296182
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AA seq
279 aa
AA seq
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MKFVGAHVSASGGVDQAVIRAHELEATAFALFTKNQRQWKAAPLSAEVIDKFKSACARYG
YGPGQILPHDSYLINLGHPLTEALEKSRAAFLDEMQRCEQLGLTLLNFHPGSHLMQIDED
KCLARIAESINIVLDQTEGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT
CHAFAAGYDLRSEEACEHTFKQLGEVVGFNYLRGMHLNDAKSEFNSRVDRHHSLGEGNIG
KTVFSYIMRDARFDNIPLILETVNPDIWAEEIAWLKAQQ
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtcggtgcacatgtcagcgcgtcaggcggcgtggatcaggcggttatccgc
gcacacgaattagaggcgaccgcgttcgccctgttcaccaaaaatcagcgtcaatggaaa
gcagcaccgttgtctgccgaagttattgataaatttaagagcgcctgcgcgcgttatggc
tatggcccggggcaaattctgccgcacgacagctatctgattaatctggggcacccgctg
accgaagcgctggagaagtcccgcgcggcctttctcgacgaaatgcagcgctgcgaacag
ctggggctgacgctgctgaacttccaccccggcagccatctgatgcagattgatgaagac
aagtgtctggcgcgcatcgccgaatccatcaatatcgtgctggatcagactgaaggcgtg
accgcggtgattgaaaacaccgccggccagggcagtaacctggggtttaaattcgagcat
ctggcggcgatcatcgacggcgtggaagacaaaagccgcgtcggcgtctgtattgacacc
tgccacgcctttgccgccggctatgacctgcgcagcgaagaagcgtgtgaacacaccttt
aagcagttgggagaggtggtcggcttcaactatctgcgcggtatgcacctgaacgatgcg
aaaagcgagttcaacagccgcgttgaccgccaccacagtctgggagaaggcaatatcggc
aaaacggtgttcagctatattatgcgcgatgcgcgcttcgataatattccgctgatcctt
gaaaccgtcaatcccgatatctgggcggaagagattgcctggctgaaagcccagcagtaa
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