Serratia sp. MYb239: CLM71_18660
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Entry
CLM71_18660 CDS
T05477
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLM71_18660 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_18660 (recD)
Enzymes [BR:
serm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLM71_18660 (recD)
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLM71_18660 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
PhoH
SLFN-g3_helicase
nSTAND3
UvrD_C
AAA_28
CbiA
AAA_16
T2SSE
ABC_tran
FtsK_SpoIIIE
SRP54
MdcG_N
MukB
TrwB_AAD_bind
MeaB
Flavi_DEAD
AAA
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
AVJ19005
LinkDB
All DBs
Position
complement(3902553..3904418)
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AA seq
621 aa
AA seq
DB search
MMQLLQQAVTLGVLRPLDIQFARVVAEPERPDMLLAAACLSAEAGAGHVCLQLEQLLPET
LFGARQPELAQAVWQAAGQPDVDEWRRLLLSSAAVSDGSLPTPLVLQQQRLYLQRMWQSE
GEVAAFIGSDDMPQDIEPQRLRPILDRLFGEAEATPDWQKIAAAVAATRRIAVISGGPGT
GKTTTVAKLLAALVQLADGERLRIQLAAPTGKAAARLTESLGSASRRLGLTAQQLSLFPT
EAATLHRLLGAQPNSQRMRYHRGNPLHLDVLVVDEASMVDLPMMARLIAALPEHARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSEARAAQLSQLTGCALQGQPAQAAAAVRDSLCLL
RKSYRFDANSGIGQLAFAVNAGDVRGARTALDGRFDDVAGYPLAETADYQALLDACVAGY
RDYLMQVAAGTGAQQVLDAFGRFQVLCALREGPFGVSGLNERIETALQRTGLIRRTPGAA
GRWYRGRPVMIGRNDSALGLFNGDIGIALPDETGELRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTVLVLPNHYLPVLTRELVYTAITRARKRLSLYAADKVLMGAVRT
PTQRRSGLAERLVMADDEQGR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagctactccaacaggcggtcacgcttggcgtgctgcgtccgctggacatacag
ttcgcccgggtggtcgccgagccggaacggccggatatgctgctggcggctgcctgcctc
agcgcggaagccggtgccggccacgtctgtctacagctggagcagctgttgccggagacg
ctgttcggcgcgcgtcagcctgagctggcgcaggcggtctggcaggctgccggccagccg
gacgttgacgaatggcggcgtttgctgctgtcgtctgctgcggtcagcgacggcagcctg
ccgacaccgctggtgctgcaacagcagcggctctatctgcagcgcatgtggcaaagcgaa
ggtgaggtggcggcctttatcggcagtgacgatatgccgcaggatattgagccgcagcgc
ctgcgtccgatcctggaccgtctgtttggcgaagcggaggctacgccggactggcagaaa
atcgccgccgccgtcgccgccacgcggcggattgcggtgatttccggcgggccgggcacc
ggcaaaaccaccacggtggcaaagctgttggcggcattggtgcagttggccgatggcgag
cggctgcgcattcagcttgcggcaccgaccggaaaagcggcggcgcggttgaccgagtcg
ctcggcagcgccagccgccggctggggctgacggcgcagcagctgagtctgtttcctact
gaggcggcaacgctgcaccgtctgctgggtgcacagccgaacagtcagcgcatgcgctat
caccgcggcaacccgctgcatctggacgtgctggtggtggatgaggcctcaatggtggat
ttgccgatgatggcgcgcctgattgccgccctgcctgaacatgccagagtgatcttcctc
ggcgaccgcgatcagctggcctcggtggaggcgggcgcggtgctgggagatatttgccgc
tttgccgagcagggctacagtgaagcgcgagcggcgcagctcagccaattgaccggctgt
gcgctgcaggggcagccggcgcaggcggctgcggcagtgcgcgatagcctgtgcctgctg
cgtaaaagctaccgttttgacgccaactcgggcattggacagctggcgtttgcggttaac
gccggcgatgtcaggggcgcgcgtacggcgctggacggccgctttgacgacgtcgccggc
tatccgctggcggaaacggcggactaccaggcgctgctggatgcctgcgtggcgggctat
cgcgactacctgatgcaggtggcagccggcaccggtgcgcagcaggtgctggatgcgttt
gggcgctttcaggtactgtgtgccctgcgggaaggaccgttcggcgtcagtgggctgaat
gaacggattgagaccgctctgcagcgcaccgggctgatacggcgtacgcccggcgccgca
gggcgctggtatcgggggcgtccggtgatgattggccgcaacgacagcgctctggggctg
tttaacggcgatatcggcattgccttaccggatgagacaggggagttgcgcgttcacttc
caactgccggacggcagcatcaagtcggtgcagccaagccgcttaccggcgcatgaaacc
gcctatgcaatgacggtgcataagtcgcaggggtcggagttcgatcatacggtactggtg
ctgcccaaccactatctgccggtgttgacgcgggagttggtgtataccgccattacccgt
gcgcgtaagcgcctgtcgctgtatgctgccgataaggtattgatgggcgccgtgcgtacg
ccgacgcagcgccgtagcgggctggcggaacgtctggtgatggcagacgatgaacagggg
cgctaa
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