KEGG   Serratia sp. MYb239: CLM71_18665
Entry
CLM71_18665       CDS       T05477                                 
Name
(GenBank) exodeoxyribonuclease V subunit beta
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
serm  Serratia sp. MYb239
Pathway
serm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:serm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    CLM71_18665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:serm03400]
    CLM71_18665
Enzymes [BR:serm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     CLM71_18665
DNA repair and recombination proteins [BR:serm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CLM71_18665
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_11
Other DBs
NCBI-ProteinID: AVJ19006
LinkDB
Position
complement(3904415..3907972)
AA seq 1185 aa
MTAQAPQTLDPLTLPLCGERLIEASAGTGKTFTIGALYLRLLLGLGKQAAFSRPLTVEEI
LVVTFTEAATEELRGRIRSNIHGLRIACIRGREHCNNPLFAALMAEIDDLADAAAQLLAA
ERQMDEAAIYTIHGFCQRMLTQNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLPL
DVARAVSQEWSGPEALLSDLSAYLHGEAPTLRQPPQEDETLLARHQKIVARIETIKAQWI
AVAADLHDLISSSGVDKRSYSSKHLPNWLHKVGEWAGQETQDYQLPKELEKFRQSMLLEK
TKKGEAPRHALFDAVDGLFAEPLTLRDLVMARALSEIRTSIQQEKRQRAELGFDDLLSRL
DGALQSAGGDHLAQAIRQRYPVAMIDEFQDTDPQQYRIFHKLYVGQAECGLLLIGDPKQA
IYAFRGADIFTYMRARSEVSAHYTLETNWRSSPTMVGSVNRLFSRLEKPFLFGEIPFIDV
AAADKNQKLAFELHNQPQAAMHFWLQPGDGVGVSDYQQQMARLCATKIRDWLNAGQREEA
WLADGDKRRPVQASDITILVRSRAEAALVRDALSLLAIPSVYLSNRDSVFDTPEAKDLLW
LLQAVLAPEQERTLRSAMATGLLGLDAPTLDALNHNERAWDMLVEEFDQYRTLWLRRGVL
PMLREVMTQRHLAENLLVSPGGERRLTDVMHLGELLQEASAQLDSEHALVRWLAQQIAQP
NSQSDNQQLRLESDRHLVQVMTIHKSKGLEYPLVWLPFVGNYRQQQQVLYHDRHSFKALL
DLNADEESMAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLIQGTRKKQGETDLHRSAL
GYLVQGGQAGDAAYLQSCLQQLADESIALSLLEPLDEQPWQPQSEQAELLAAREVKRQLQ
DFWRVTSYTGLQQHGAGLMQDLLPRLDVDAAGEKAAESEPSLTPHTFPRGAAPGTFLHSL
FETLDFTQPLDSAWLAEQLQLNGYDACWQPVLQTWMETLLHTVLNDSGATLAQLTPQAKQ
AELQFYLPIGQLLQASQLDTLVKRYDPLSARCPALDFQRVQGMLKGFIDLIFCWQGKYYL
LDYKSNWLGEDSSAYTQPAMAQAMAEHRYDLQYQLYTLALHRYLRHRLADYDYQRHFGGV
IYLFLRGVDGQHPGNGIFACRPEAALVEGMDRLFSGDDNQGESEA
NT seq 3558 nt   +upstreamnt  +downstreamnt
atgacggcgcaggctccgcaaacgctcgatccgttaacgctgccgctttgcggcgaacgg
ctgattgaagcctcggcggggaccggcaagaccttcaccatcggcgcgctgtatctgcgc
ctgctgttgggtttgggtaagcaggcggcgttttcccgcccgctgacggtagaggaaatt
ttggtggtgacctttaccgaggccgccaccgaagagctgcgcggccgtatccgcagcaat
attcacgggctgcgcatcgcctgtatccgcgggcgtgagcactgcaacaacccgctgttc
gctgcattaatggcggagattgacgacctggcggatgcggcggcgcagctgttggccgcc
gagcggcaaatggatgaggcggcgatctataccatccatggcttctgtcaacgtatgctg
acccagaacgcctttgagtccggcattttatttgagcagacgctggtgcaggatgagctg
cctctgcgccggcaggcctgcgcagacttttggcgccgccattgctacccgctgccgctg
gacgttgcgcgcgcggtcagccaggagtggagcgggccggaagccttgctgagcgacctg
tccgcctatctgcacggggaggcgccaacgctgcgccaaccgccgcaggaggatgaaacg
ctgctggcgcgccaccagaagatcgtggcgcgtattgaaaccatcaaagcgcaatggatc
gcggtggcggccgatctgcatgaccttatcagcagttccggcgtggataaacgcagctac
agcagcaagcacttgcctaactggctacataaggtcggagagtgggccgggcaggaaacg
caggattatcaactgccgaaggaactggaaaaattccgccagtcgatgctgctggagaaa
accaagaagggcgaggcgccgcgccatgccctgtttgacgccgttgatggtctgtttgcc
gaaccgttgacgctgcgcgatttggtgatggcgcgcgcgctgagcgagattcgcacctcg
attcaacaggaaaagcgccagcgcgccgaactggggtttgacgacctgctaagccgactg
gacggcgccctgcaaagtgcgggtggcgatcatctggcgcaggcgatacgtcagcgctat
ccggtggcgatgattgacgaatttcaggataccgacccgcagcagtatcgtattttccac
aagttatatgtggggcaggcggagtgcggactgctgttgattggcgatcccaaacaggcg
atttacgcgttccgtggggcggacattttcacctatatgcgtgcccgctctgaggtgagc
gcccactatacgctggagaccaactggcgctcttccccgacgatggtcggcagcgtcaac
cggctgttttcccggctggaaaaaccgtttctgttcggcgagatcccgtttattgacgtg
gcggcggcggataagaaccagaaactggcgtttgaactgcataatcagccgcaggccgct
atgcacttctggctgcagccgggcgacggcgtcggagtgagcgactaccaacagcaaatg
gcacgcctgtgcgcgacgaaaattcgcgactggctgaatgccgggcagcgcgaagaagcc
tggctggcggatggcgacaagcgccggccggtacaggcgtcggatatcaccatcctggtg
cgcagccgggcggaagcggcgctggtgcgcgatgcgctcagcctgttggcgattccttca
gtatacttgtcgaatcgtgacagcgtgtttgatacgccggaagccaaagatttgctgtgg
ctgttgcaggcggtgctggcgccggagcaggagcggaccttacgcagcgcgatggcgacc
ggcctgctggggctggatgcgccgacgctggatgcgctgaatcataacgagcgggcgtgg
gacatgctggtcgaagagtttgaccaatatcgcacgctgtggctgcggcgcggcgtattg
ccgatgctgcgcgaggtaatgacgcaacggcatttggccgagaatctgttggtcagcccc
ggcggcgagcggcgtctgaccgatgtgatgcacctgggtgaactgctgcaggaggcgtcg
gcacagctcgacagcgagcatgcgctggtgcgctggctggcgcagcagattgcccagccg
aacagccagtcggacaaccagcagctgcgtctggaaagcgaccgccacctggtgcaggtg
atgacgattcacaagtccaaagggttggagtatccgttggtctggctgccgtttgtcggc
aactatcgccagcagcagcaggtgctgtatcacgatcgccacagtttcaaagccttgctg
gatctgaatgccgatgaagagagcatggcctgggccgaggaggagcggctggcggaggat
ttacgcctgctttacgtcgcgctgacgcgttcggtgtaccactgtagcatcggcattgcg
ccgcttattcaggggacacgtaaaaagcagggggagacggatttgcatcgcagtgcgctg
gggtatctggtgcagggcggtcaggcgggggatgccgcctatttgcagagctgtctgcag
caactggctgatgaaagcattgcgttatccctgctggaaccgctggatgagcagccttgg
cagccgcagagcgagcaggcagagctgttggcagccagagaggtcaagcgacagttgcag
gacttttggcgggtgaccagctataccggcctgcagcaacacggcgccgggctgatgcag
gatctgctgcctcgtctggacgttgatgctgcgggtgagaaggcggctgagagtgagccg
tcactgaccccgcacacctttccgcgcggcgcagcgccgggcacctttttacacagcctg
tttgaaacgctggattttacccagccgctggattccgcctggctggcggagcagctgcag
ctgaacggttatgacgcgtgttggcagccggtgctgcagacgtggatggagacgctgctg
cataccgtactaaatgacagcggcgccacgctggcgcagctgacgccgcaggctaaacag
gcggagctgcagttttatctgccgatcggccagctgttgcaggcatcgcagctggatact
ctggtgaagcgctatgacccgctgtcggcacgctgtccggcgctggattttcaacgagtg
caggggatgttgaaaggctttatcgacctgattttctgctggcagggaaaatattacctg
ctcgactataaatccaactggctgggtgaagacagcagcgcctatacgcagccggcgatg
gcgcaggcgatggcggaacatcgttacgacctgcagtatcagctgtataccctggcgctg
caccgctatctgcgccaccgtctggcggactatgactatcaacgccactttggcggcgtg
atttatctgtttttgcgcggcgtcgacggtcagcatcccggcaacggcatttttgcctgc
cgtcctgaagctgccttggtggaggggatggatcggctgttcagcggcgacgataaccag
ggggaatctgaagcatga

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