Serratia sp. MYb239: CLM71_18665
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Entry
CLM71_18665 CDS
T05477
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
serm
Serratia sp. MYb239
Pathway
serm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CLM71_18665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serm03400
]
CLM71_18665
Enzymes [BR:
serm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CLM71_18665
DNA repair and recombination proteins [BR:
serm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CLM71_18665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AVJ19006
LinkDB
All DBs
Position
complement(3904415..3907972)
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AA seq
1185 aa
AA seq
DB search
MTAQAPQTLDPLTLPLCGERLIEASAGTGKTFTIGALYLRLLLGLGKQAAFSRPLTVEEI
LVVTFTEAATEELRGRIRSNIHGLRIACIRGREHCNNPLFAALMAEIDDLADAAAQLLAA
ERQMDEAAIYTIHGFCQRMLTQNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLPL
DVARAVSQEWSGPEALLSDLSAYLHGEAPTLRQPPQEDETLLARHQKIVARIETIKAQWI
AVAADLHDLISSSGVDKRSYSSKHLPNWLHKVGEWAGQETQDYQLPKELEKFRQSMLLEK
TKKGEAPRHALFDAVDGLFAEPLTLRDLVMARALSEIRTSIQQEKRQRAELGFDDLLSRL
DGALQSAGGDHLAQAIRQRYPVAMIDEFQDTDPQQYRIFHKLYVGQAECGLLLIGDPKQA
IYAFRGADIFTYMRARSEVSAHYTLETNWRSSPTMVGSVNRLFSRLEKPFLFGEIPFIDV
AAADKNQKLAFELHNQPQAAMHFWLQPGDGVGVSDYQQQMARLCATKIRDWLNAGQREEA
WLADGDKRRPVQASDITILVRSRAEAALVRDALSLLAIPSVYLSNRDSVFDTPEAKDLLW
LLQAVLAPEQERTLRSAMATGLLGLDAPTLDALNHNERAWDMLVEEFDQYRTLWLRRGVL
PMLREVMTQRHLAENLLVSPGGERRLTDVMHLGELLQEASAQLDSEHALVRWLAQQIAQP
NSQSDNQQLRLESDRHLVQVMTIHKSKGLEYPLVWLPFVGNYRQQQQVLYHDRHSFKALL
DLNADEESMAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLIQGTRKKQGETDLHRSAL
GYLVQGGQAGDAAYLQSCLQQLADESIALSLLEPLDEQPWQPQSEQAELLAAREVKRQLQ
DFWRVTSYTGLQQHGAGLMQDLLPRLDVDAAGEKAAESEPSLTPHTFPRGAAPGTFLHSL
FETLDFTQPLDSAWLAEQLQLNGYDACWQPVLQTWMETLLHTVLNDSGATLAQLTPQAKQ
AELQFYLPIGQLLQASQLDTLVKRYDPLSARCPALDFQRVQGMLKGFIDLIFCWQGKYYL
LDYKSNWLGEDSSAYTQPAMAQAMAEHRYDLQYQLYTLALHRYLRHRLADYDYQRHFGGV
IYLFLRGVDGQHPGNGIFACRPEAALVEGMDRLFSGDDNQGESEA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcaggctccgcaaacgctcgatccgttaacgctgccgctttgcggcgaacgg
ctgattgaagcctcggcggggaccggcaagaccttcaccatcggcgcgctgtatctgcgc
ctgctgttgggtttgggtaagcaggcggcgttttcccgcccgctgacggtagaggaaatt
ttggtggtgacctttaccgaggccgccaccgaagagctgcgcggccgtatccgcagcaat
attcacgggctgcgcatcgcctgtatccgcgggcgtgagcactgcaacaacccgctgttc
gctgcattaatggcggagattgacgacctggcggatgcggcggcgcagctgttggccgcc
gagcggcaaatggatgaggcggcgatctataccatccatggcttctgtcaacgtatgctg
acccagaacgcctttgagtccggcattttatttgagcagacgctggtgcaggatgagctg
cctctgcgccggcaggcctgcgcagacttttggcgccgccattgctacccgctgccgctg
gacgttgcgcgcgcggtcagccaggagtggagcgggccggaagccttgctgagcgacctg
tccgcctatctgcacggggaggcgccaacgctgcgccaaccgccgcaggaggatgaaacg
ctgctggcgcgccaccagaagatcgtggcgcgtattgaaaccatcaaagcgcaatggatc
gcggtggcggccgatctgcatgaccttatcagcagttccggcgtggataaacgcagctac
agcagcaagcacttgcctaactggctacataaggtcggagagtgggccgggcaggaaacg
caggattatcaactgccgaaggaactggaaaaattccgccagtcgatgctgctggagaaa
accaagaagggcgaggcgccgcgccatgccctgtttgacgccgttgatggtctgtttgcc
gaaccgttgacgctgcgcgatttggtgatggcgcgcgcgctgagcgagattcgcacctcg
attcaacaggaaaagcgccagcgcgccgaactggggtttgacgacctgctaagccgactg
gacggcgccctgcaaagtgcgggtggcgatcatctggcgcaggcgatacgtcagcgctat
ccggtggcgatgattgacgaatttcaggataccgacccgcagcagtatcgtattttccac
aagttatatgtggggcaggcggagtgcggactgctgttgattggcgatcccaaacaggcg
atttacgcgttccgtggggcggacattttcacctatatgcgtgcccgctctgaggtgagc
gcccactatacgctggagaccaactggcgctcttccccgacgatggtcggcagcgtcaac
cggctgttttcccggctggaaaaaccgtttctgttcggcgagatcccgtttattgacgtg
gcggcggcggataagaaccagaaactggcgtttgaactgcataatcagccgcaggccgct
atgcacttctggctgcagccgggcgacggcgtcggagtgagcgactaccaacagcaaatg
gcacgcctgtgcgcgacgaaaattcgcgactggctgaatgccgggcagcgcgaagaagcc
tggctggcggatggcgacaagcgccggccggtacaggcgtcggatatcaccatcctggtg
cgcagccgggcggaagcggcgctggtgcgcgatgcgctcagcctgttggcgattccttca
gtatacttgtcgaatcgtgacagcgtgtttgatacgccggaagccaaagatttgctgtgg
ctgttgcaggcggtgctggcgccggagcaggagcggaccttacgcagcgcgatggcgacc
ggcctgctggggctggatgcgccgacgctggatgcgctgaatcataacgagcgggcgtgg
gacatgctggtcgaagagtttgaccaatatcgcacgctgtggctgcggcgcggcgtattg
ccgatgctgcgcgaggtaatgacgcaacggcatttggccgagaatctgttggtcagcccc
ggcggcgagcggcgtctgaccgatgtgatgcacctgggtgaactgctgcaggaggcgtcg
gcacagctcgacagcgagcatgcgctggtgcgctggctggcgcagcagattgcccagccg
aacagccagtcggacaaccagcagctgcgtctggaaagcgaccgccacctggtgcaggtg
atgacgattcacaagtccaaagggttggagtatccgttggtctggctgccgtttgtcggc
aactatcgccagcagcagcaggtgctgtatcacgatcgccacagtttcaaagccttgctg
gatctgaatgccgatgaagagagcatggcctgggccgaggaggagcggctggcggaggat
ttacgcctgctttacgtcgcgctgacgcgttcggtgtaccactgtagcatcggcattgcg
ccgcttattcaggggacacgtaaaaagcagggggagacggatttgcatcgcagtgcgctg
gggtatctggtgcagggcggtcaggcgggggatgccgcctatttgcagagctgtctgcag
caactggctgatgaaagcattgcgttatccctgctggaaccgctggatgagcagccttgg
cagccgcagagcgagcaggcagagctgttggcagccagagaggtcaagcgacagttgcag
gacttttggcgggtgaccagctataccggcctgcagcaacacggcgccgggctgatgcag
gatctgctgcctcgtctggacgttgatgctgcgggtgagaaggcggctgagagtgagccg
tcactgaccccgcacacctttccgcgcggcgcagcgccgggcacctttttacacagcctg
tttgaaacgctggattttacccagccgctggattccgcctggctggcggagcagctgcag
ctgaacggttatgacgcgtgttggcagccggtgctgcagacgtggatggagacgctgctg
cataccgtactaaatgacagcggcgccacgctggcgcagctgacgccgcaggctaaacag
gcggagctgcagttttatctgccgatcggccagctgttgcaggcatcgcagctggatact
ctggtgaagcgctatgacccgctgtcggcacgctgtccggcgctggattttcaacgagtg
caggggatgttgaaaggctttatcgacctgattttctgctggcagggaaaatattacctg
ctcgactataaatccaactggctgggtgaagacagcagcgcctatacgcagccggcgatg
gcgcaggcgatggcggaacatcgttacgacctgcagtatcagctgtataccctggcgctg
caccgctatctgcgccaccgtctggcggactatgactatcaacgccactttggcggcgtg
atttatctgtttttgcgcggcgtcgacggtcagcatcccggcaacggcatttttgcctgc
cgtcctgaagctgccttggtggaggggatggatcggctgttcagcggcgacgataaccag
ggggaatctgaagcatga
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