Serratia sp. MYb239: CLM71_19990
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Entry
CLM71_19990 CDS
T05477
Name
(GenBank) fimbrial protein FimD
KO
K07347
outer membrane usher protein
Organism
serm
Serratia sp. MYb239
Pathway
serm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
serm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CLM71_19990
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
serm02000
]
CLM71_19990
02044 Secretion system [BR:
serm02044
]
CLM71_19990
02035 Bacterial motility proteins [BR:
serm02035
]
CLM71_19990
Transporters [BR:
serm02000
]
Other transporters
Pores ion channels [TC:
1
]
CLM71_19990
Secretion system [BR:
serm02044
]
Chaperone-usher system
Type 1 pilus assembly protein
CLM71_19990
Bacterial motility proteins [BR:
serm02035
]
Pilus system
Fimbrial proteins
CLM71_19990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
AVJ19251
LinkDB
All DBs
Position
complement(4199268..4201847)
Genome browser
AA seq
859 aa
AA seq
DB search
MDNLPGKIGRDWRLRKKPEGHILLGAILAALAGNVSAQQDEPLNFDTGFLKFSDGESSSS
FNLDYFSRSGGMLPGQYEVTVFVNDKKVDTRIVDFISRTQEAGRLQASIRAADLNAWGIQ
PQAEIVSALQAVRPPEMKTAGENRAYTLSEWVPQSQEAFDFQSGELRIIVPQAYVAPPGW
LRTPPALWDQGMPALLLNYDYSGSLQNNEDGRNQNDFVSLNGLLNLWGWRLRHDMNWSRS
SGAKGRWNSLNSWLQHDYGFWQGGQFTLGQTSTDGSILDSVPFRGVMMQSDDGMLNAEMG
AFAPVIRGIANGNALVSVRQNGQLLYQKNVPPGPFELRDFSQAYAGDVDVEIKEADGSIR
RFTQASATVPVLQRKGRVRYSLALGDYHQGNDVSNGVSRRFALASSAWGMGVNTTLYGGA
LLSRDYQSMVLGIGQYLTRLGAFSADVTHASTHLPRRGRSQGQAYRFAWARGFGATSLNL
MAYRYATRGYYSFNDIQQMPKKALSQEEGYRRGHQRSRLQISASHSLGSYGSLSLSGSRD
DYWNKSGYGQNWSASYGTSLKGISVSLSGGYSTSPYLSRADKSFSLSLSMPLNRLFGSGM
SSVNYSTTAQNARTQHQMGVSGSLLQDDSLSYSLAQGWGNQGQGASGNLNLGYTASYGMI
NGGYGWQRNSRQWNYGLSGGVVVHPHGATLSQPLSLEGASALVEMPGASGVKVSHGNIRT
DWFGYAVVPNLIPYERNEITADIQDLHDNVELKETNKLLIPAKGSLVSARFNAEVGRRVL
ITLQRSGKPVPFGAMVSVQLPDAVRTGIVADRGQVYLSGMPDSGTLTATWGRYEDERCQA
EFRLAKDNGTFAEATAQCR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggataatctgccgggaaaaatcggaagggattggcgtctgcgtaaaaagcctgagggg
catattcttctgggggccatattggccgcgctggccggaaatgtttccgcacagcaggat
gaaccgttgaattttgataccgggtttctgaagttctctgatggagaatcctcgtcttca
tttaacctggactatttctcccgctcgggggggatgttgcccgggcagtatgaagtcacc
gtttttgttaacgataaaaaagttgatacccggattgttgattttatctcccgcacgcaa
gaggctggccgcctgcaggcatcgatccgcgctgcggatttgaacgcctggggcattcaa
ccgcaggcggagattgtctctgcgctgcaggcggtgcgcccgccggaaatgaaaacggcc
ggagaaaatagggcctatacgctgagcgagtgggtgccacagtctcaggaggcatttgat
tttcagagtggcgagctgcgcattatcgtgcctcaggcgtatgttgcgcccccgggctgg
ttgcgcacgccgccggcgctgtgggaccaggggatgcccgcactgctgctgaattatgac
tattcgggatccttgcagaacaacgaagacggccgcaaccagaatgactttgtcagtctt
aacgggctgctgaacctgtggggctggcgtttgcgccacgatatgaactggtcgcgcagc
tcgggggccaaagggcgctggaacagcctgaacagctggctgcagcacgactatgggttc
tggcagggcgggcagtttaccctggggcagacttcgaccgacggcagcattctggacagc
gttccctttcgcggcgtgatgatgcagtcggatgacggcatgctgaacgccgagatgggg
gcgtttgcgccggtgattcgcggtattgccaacggcaatgcgctggtgtcggtgcggcag
aatggtcaactgctgtaccagaaaaacgtgccgccggggccgttcgagctgcgagatttt
tctcaggcctatgcgggtgacgtggatgtagagattaaagaggcggacggcagcatacgg
cgttttacccaggcatccgccacggtgccggtgctgcaacggaaggggcgggttcgctac
agcctggcgctgggcgattatcatcagggcaatgacgtcagtaacggcgtgtcacgccgt
tttgcactggcgtcgtccgcctggggcatgggggtcaataccaccttgtatggcggcgca
ctgctttcccgtgattatcagtccatggtgctggggattgggcaatatctgacgcggctc
ggggctttttcggcggacgttacccatgccagtacgcacctgccgaggcggggacgcagt
cagggtcaggcctaccgtttcgcctgggccagagggtttggcgccacatcgctgaaccta
atggcgtaccgttatgccacccgtggttattactcctttaacgatatacagcaaatgccg
aaaaaggcgctgtcgcaggaagagggataccggcgcggccaccagcgttcacgtctgcag
atatcggcttctcacagcctgggaagctacggctcgctctccctgtcgggcagccgggat
gattactggaataagtccggctacgggcagaactggtcggcgagctacggcaccagcctg
aaaggcatttccgtatcgctttccggcggatacagcacctcgccgtatctgtcgcgcgcc
gataaaagcttttcgctgagcctctccatgccgctgaaccggctgtttggctcgggtatg
tcgtcggtgaactactccaccacggcgcagaacgcccgtacccagcaccagatgggcgtc
agcgggtcattgttacaggatgacagcctgagctactccctggctcagggctgggggaat
caggggcagggggcgtccggcaacctcaacctggggtataccgcgtcttacggcatgatc
aacggcggctatggctggcagcgtaacagccggcagtggaactatggcctgagcggcggc
gtggtggtgcatccgcacggcgccacgctgtcccagccgctgtcgctggaaggggccagc
gcgctggtcgagatgccgggcgcatccggggtgaaggtgtcccacggcaatatccgcacc
gactggtttggctacgcggtggtgcccaacctgatcccttatgagcgcaacgagatcacg
gcggatattcaggatctgcacgataacgtggagctgaaggaaaccaacaagctgctgatt
cctgccaaaggatcgctggtttctgcccggtttaatgccgaagtgggccgccgcgtgctg
attacgctgcagcgcagcggtaaaccggtaccgtttggcgccatggtgtcggtacagctg
ccggatgcggtcagaacgggcattgtggccgatcgcgggcaggtctatctgtcggggatg
ccggacagcgggacgctgacggccacctggggacgctatgaggatgaacgctgtcaggcc
gagttccgtctggcgaaggataacggcacttttgcggaggcaacggcacaatgtcgatga
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