Serratia sp. NGAS9: GUC32_01300
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Entry
GUC32_01300 CDS
T10949
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sern Serratia sp. NGAS9
Pathway
sern03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sern00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GUC32_01300 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sern03021
]
GUC32_01300 (rpoB)
03400 DNA repair and recombination proteins [BR:
sern03400
]
GUC32_01300 (rpoB)
Enzymes [BR:
sern01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GUC32_01300 (rpoB)
Transcription machinery [BR:
sern03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GUC32_01300 (rpoB)
DNA repair and recombination proteins [BR:
sern03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GUC32_01300 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QHI76285
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All DBs
Position
281217..285245
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SSLVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGIEADKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtgctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgcattccgttctgttttccctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtcttc
gacgtcaaagagtgccagattcgtggtgtgacgttctctgcaccgctgcgcgtaaaactg
cgcctggttatctatgagcgcgaagcgcctgaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgaaattccgctcatgaccgaaaacggcacctttgtgatcaacggt
actgagagggttatcgtatctcagttgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcttcgggtaaagtgctgtacaacgcacgcatcatcccttaccgc
ggttcatggttggacttcgagttcgatccgaaagacaacctgttcgtgcgtattgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgctgaactacaccactgaacagatc
ctcgacctgttctttgacaagatcgtcttcgaaatccgcgacaacaagctgcagatggag
ctggtgccagagcgcctgcgtggtgagaccgcttcgttcgatatcgaagccaacggcaag
atctacgtagagaaaggccgtcgtatcaccgcccgtcatatccgtcagctggaaaaagac
gacattcagagcattgaagtaccggtagagtacatcgcgggcaaagtggtcgcgaaagac
tatatcgataccaataccggcgaactgatctgcgcagccaacatggagctgtcgctggat
ctgctggccaagctgagccagtctggccacaagcgcatcgaaacgctgttcaccaacgat
ctggaccacggcgcgtacatctctgaaacgctgcgtgtcgatccgaccaacgatcgtctg
agctcgctggtagaaatctaccgcatgatgcgccctggtgagccgccaacgcgcgaagct
gccgaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctgtccgcggtg
ggtcgcatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttcgggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggcaagggc
gaagtggacgacatcgaccacttgggcaaccgtcgtatccgctccgtcggcgaaatggcc
gagaaccagttccgcgtaggtctggtgcgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgagatcacgcacaagcgtcgtatctccgcactgggcccgggcggtctgacccgt
gagcgcgccggctttgaagttcgagacgtacacccgacccactacggccgcgtgtgccca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggtgacc
gatgaaatcaactacctgtctgctattgaagaaggcaacttcgttatcgcccaggcgaac
tccaacctggatgaagaaggccgcttcgtagaagacctggtcacctgccgcagcaaaggc
gaatcaagcctgttcagccgcgatcaggttgactacatggacgtatccacccagcaggtt
gtttccgttggtgcctcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgtaccaaccctgcgcgctgacaagccgctggtc
ggtaccggtatggaacgtgctgtagcggttgactccggcgtaaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgatatttacaacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgagtctgggtgagccaatcgagcgcggt
gacgtgctggcggatggcccatcgacagacctgggcgaactggcactgggccagaacatg
cgcgtagcgttcatgccttggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaggaagatcgcttcaccaccatccacatccaggaactggcgtgcgtgtct
cgcgacaccaagctggggcctgaagagatcaccgccgacatccctaacgtgggtgaagct
gcgctctccaagctggatgaatccggtatcgtgtatatcggcgctgaagtgaccggcggt
gacatcctggtcggtaaggtaacgcctaaaggcgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgtgcaggtcttcacccgcgatggcgtggaa
aaagacaagcgcgcgttggaaatcgaagagatgcagctgaaacaggcgaagaaagacctg
acggaagaactgcagatcctggaagccggcctgtttgcacgtatccacgcggtgctggtt
gccggtggcatcgaagccgacaagctgagcaagctgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggaacagctggccgagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggaagccaagcgtcgtaagatcactcagggcgac
gatctggcgccgggcgtgctgaaaatcgtcaaggtttatctggctgttaaacgtcagatc
caaccgggtgacaagatggcgggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gcgaaaggcatcggtgagaagatcaaccagatgctgaagcagcagcaggaagtggccaag
ctgcgtgagttcatccagaaggcctacgatctgggcgacgacgtttgccagaaagttgac
ctgaacaccttcagcgacgacgaagtgctgcgtctggcagagaacctgaaaaaaggtatg
ccgatcgcaacaccggtgtttgacggtgcgaaagagactgaaatcaagaagctgctggaa
atgggtggtatcccgacctccggtcagatcacgctgttcgatggccgtaccggtgagcaa
ttcgagcgccaggttactgtcggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggttcttacagcttggttactcagcaacctctgggt
ggtaaagcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgcggcttataccctgcaggaaatgctcaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccggatggagccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctcggcatcaacatcgaactggaa
gacgagtaa
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