Serratia sp. NGAS9: GUC32_12715
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Entry
GUC32_12715 CDS
T10949
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sern Serratia sp. NGAS9
Brite
KEGG Orthology (KO) [BR:
sern00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sern03019
]
GUC32_12715 (hrpA)
Enzymes [BR:
sern01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GUC32_12715 (hrpA)
Messenger RNA biogenesis [BR:
sern03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GUC32_12715 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
SLFN-g3_helicase
AAA_23
HALZ
Motif
Other DBs
NCBI-ProteinID:
QHI78396
UniProt:
A0AAX1G8H9
LinkDB
All DBs
Position
complement(2665759..2669646)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLEALPAQLGELMLRDQQRLRRRLQGARKIKNPDAQLAVAADVESDIATARQKVQAR
AASCPRITYPESLPVSQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDGDDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTADNGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLQEQQKANSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPINSTPSDYRSVHTALLTGLLSHIGQKDTDKQEFTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYGAIDPLLCRELFIRHALVEGDWQTRHAFFRENQKLRAEVEELEHKSRR
RDILVDDEMLFGFYDRRIPNDVVSGRHFDSWWKSAAKQQPDLLNFEKEMLIKDGANKISA
LDYPNFWHQGNLKLRLSYQFEPGTDADGVTVHIPLPILNQVEEQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGMTVSRDDWQWDQV
PDHLKMTFRVVGEKNQTLREGKDLAALRLQLKEKVQETLSAVADDGLEQSNLHVWSFGQL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSESEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCISCGIDKLIAEHGGPVWQEADFARLQEQIRAEL
NDTVVEVAKQVEQILTAVFNINKRLKGRVDMSLALALSDIKTQLGGLVYRGFVTGNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKAVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgaggcactgccggcccaactgggcgagctgatgctccgcgatcaa
caacgcctgcgtcgtcgcctgcagggcgcacgaaaaatcaaaaatcccgatgcccagctg
gcggtcgccgccgacgtggaaagcgacatcgcgacggcgcggcaaaaagtgcaggcgcgc
gccgcgtcttgcccgcgcattacctatccggaaagcctgccggtcagccaaaaaaagcag
gacatcttaaacgctgtccgcgaccaccaggtggtgatcgtcgccggggagaccggctcg
ggaaaaaccacccagttgccgaagatctgtctggagctggggcgtggggtgaaagggctg
atcggccatacccagccgcgccgcctggcggcgcgcaccgtcgccaaccgcatcgccgac
gagctggaaaccccgctcggcggcagcgtgggctacaaggtgcgcttcaacgatcaggtg
ggggaaaacaccctggtcaagctgatgactgacggtatcttgctggcggagattcagcag
gatcgcctgctgatgcagtacgacacgttgatcatcgatgaagcgcacgagcgcagcctg
aatatcgactttattctcggctacctgcgcgaactgctgccgaagcgcccggatctcaag
gtgatcatcacctcggcgaccatcgatccgcagcgtttctcgcgccacttcaacaatgcg
ccgatcatcgaggtttccggccgcacctacccggtggaggtgcgttaccgcccggtggtg
gacgacggcgatgataccgaccgcgaccagctgcaggcgattttcgatgcggtggacgag
cttgggcgcgaagggccgggtgacattctgatcttcatgagcggcgagcgcgagatccgc
gataccgccgacgctttgaaccgcctcaatttgccgcacaccgaggtgctgccgctgtat
gcgcgcctgtcgaacagcgagcagaaccgggttttccagtcgcaccacggccgccgcatc
gtgctggccaccaacgtggcggaaacctcgctgacggtgccgggcatcaaatacgtcatc
gatccgggcaccgcgcgcatcagccgctacagcttccgcaccaaggtgcagcgcctgccg
atcgagccggtgtcgcaggcctccgccaaccagcgtaaagggcgctgtggccgcgtgtcg
gagggcgtgtgcatccgtctgtactctgaacaggatttcctctcgcggccggcgtttacc
gatccggaaattctgcgcaccaacctggcgtcggtcattctgcagatgacctcgctgggg
ctgggcgacatcgccgcgtttccgtttgtcgaggcgccggacaagcgcaacattcaggat
ggcgtgcgcctgctggaagagctgggggcgatcaccaccgccgataacggccactatcag
ctgacgccgcagggccggcagctggcgcagttgccgatcgacccgcgtctggcgcgcatg
gtgttggaagcgcagaagagcggcagcgtgcgcgaggtgatgatcattaccgccgcgctg
tcgattcaggatccgcgcgagcgcccaatggataagcagcaggcctcggatgaaaaacac
cgccgttttgccgacaaagactcggacttcctggcgttcgtcaacctgtgggattatctg
caggagcagcaaaaggcgaactcttccagtcagttccgccggctgtgccgcaacgatttt
ctcaactacctgcgggtgcgcgagtggcaggatatctatacccaactgcgccaggtggtg
aaagaactggggctgccgatcaacagcacgccttccgattatcgcagcgtccacaccgcg
ctgctgaccggcctgctgtcgcacatcggccagaaggatacggacaagcaggaatttacc
ggcgcgcgcaacgcccgcttctcgatcttccccggctccggcctgttcaagaagccaccg
aagtggaccatggtggccgaactggtggaaaccagccgcctgtggggacgcatcgccgcg
cgcatcgaaccggaatggatcgagccgctggctcagcacttggtgaaacacagctacagc
gaaccgcactggtcgaagtcgcagggggcggtgatggccagcgaaaaggtcacgctgttt
ggtctgccgatcgttgcggcgcgccaggtcaactacggcgccatcgatccgctgctgtgc
cgtgagctgtttatccgccatgcgctggtagagggagactggcagacgcgccacgccttc
ttccgcgaaaaccaaaagctgcgcgccgaggtggaagaactggagcataaatcgcgccgc
cgcgacattctggtggatgacgaaatgctgttcgggttctacgatcgccgcatccccaac
gacgtggtgtccggccgtcatttcgacagctggtggaagagcgcggccaagcagcagccg
gatctgctgaacttcgaaaaagagatgctgatcaaagacggcgccaacaagatcagcgcg
ctggattacccgaacttctggcatcagggcaacctcaagctgcggctgagctaccagttt
gaaccgggcaccgacgctgacggcgtgacggtgcacatcccgctgccgatcctcaaccag
gtggaggagcagggcttcgaatggcagatccccggcatccgccgtgagctggtgattgca
ctgatcaagtcgctgccgaaaccggtgcgtcgcaacttcgtgccggcaccgaactacgcc
gaggcgttccttggccgcgtaacggcgctggaattgccgctgctggacgcgctggagcgc
gagctgcggcgcatgactggcatgaccgtgtcacgtgatgactggcagtgggatcaggtg
cccgatcatctgaagatgaccttccgcgtggtgggcgagaaaaaccagacgctgcgcgaa
ggcaaagatctggccgccttgcgcctgcagttgaaagagaaggtgcaggagacgctgtcg
gcggtggccgatgacggactggagcagagtaacctgcatgtctggagctttggccaattg
ccggcgttttacgagcagaagcgcggcggctattcgatgaaggcatacccggcgctggtg
gatgaaaaggacagcgtggcgatccgcctgttcgacagcgaaagcgagcagcaacaggcg
atgtggcagggcacgcgtcgcctgctgttgttgaatattccttcaccgatcaaatacctg
catgagaaactgccgaacaaagccaagctggggctctatttcaacccgtacggcaaggtg
ctggagctgatcgacgactgcatatcgtgcggcatcgacaagctgatcgccgaacacggc
ggcccggtctggcaagaagcagactttgcacggctgcaggagcagatccgcgccgagctg
aacgacacggtcgtcgaggtggccaagcaggttgaacagatcctgacggcggtcttcaac
atcaacaaacggctgaaaggccgggtggacatgtcgttggcgctggcgctgtcggacatc
aagacccagctcggcgggctggtttaccgcggcttcgtgactggcaacggatggaagcgc
ctgccggatacgctgcgctacctgcaggcgatcgagcggcggttggaaaaactggctatt
gatccgcaccgcgatcgcgcgcagatgttgcgggtggagcaggtgcagcaggcgtggcag
cagtggctgaacaagctgccgccgaagcgacagcaggaggaagaagtaaaagcggtgcgc
tggatgatagaagagctgcgcgtcagcctgttcgcgcaacagttgggcacgccttacccg
atctccgataagcgcattttgcaaactatcgagcagctttcgagctaa
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