Prodigiosinella confusarubida ATCC 39006: CWC46_00505
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Entry
CWC46_00505 CDS
T05968
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq02020
Two-component system
serq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CWC46_00505
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWC46_00505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serq03021
]
CWC46_00505
Transcription machinery [BR:
serq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWC46_00505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AUG98436
UniProt:
A0A2I5TDX4
LinkDB
All DBs
Position
109609..111042
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQADTHEEVDTVE
NTDSEALDTREALEQKDMPDELPLDAAWDEIYTAGTPSGTSTDYRDDELPVYQGETTQTL
QDYLMWQVELTPFSDTDAAIATSIVDAVDNTGYLTVSLDEIRESIGDDNVTMEEVEAVLK
RVQHFDPIGVAARDLRDCLLVQLSQFAPDTPWLSEAKLIVSEFLDLLANHDFRALIRSSR
LKEDVLKEALALIQSLDPRPGQSINTGESEYVIPDVLTHKVQDRWIVELNTDSVPRLQIN
QQYAAMGNSVRSDSDGQFIRSHLQEARWLIKSLESRNETLLKVTRCIVEQQLAFFEQGEE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSEQGIIVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggcttagccaacaattggccatgacaccacaactgcaa
caggcaattcgtctgctgcagttgtccacgcttgaactccagcaagagatccaacaggcg
ctggaaagcaatccattgttagaacaggctgatacgcatgaagaagtagacaccgtagaa
aacaccgacagcgaagcattagatacacgggaagcgctggaacagaaagatatgccagat
gaactgccgctggatgccgcctgggatgaaatttatactgccggaaccccttcaggtacc
agcactgactaccgcgatgacgaactgccagtctaccagggagaaaccacccaaaccttg
caggactacctgatgtggcaggtggaactgacaccgttttctgatactgatgcggctatt
gccacatcaatagtggatgcggttgacaacactggctatctgaccgtatcgctggatgaa
atccgtgagagcatcggtgacgataatgtcacgatggaagaagtggaagcagtactcaag
cgggtacagcattttgacccgataggtgttgccgctcgcgatctgcgagactgcctgcta
gtacaactttcgcaatttgcgccggatacgccctggctgtcagaggctaaactgattgtc
agtgagtttctggatctgctggcaaaccatgattttcgtgccttgatccgttccagtcgt
ctgaaagaagatgtactgaaagaagctctggcattaattcaatcccttgacccgcgccct
ggtcaatcaattaacactggtgaatcagaatatgtgattcccgatgttctgactcataag
gtacaagatcgctggatagtcgaactgaacacagacagtgttcccaggttacagatcaac
cagcaatatgcggcgatgggcaacagtgtgcgtagtgacagtgacggccagtttatccgt
agtcacctgcaggaagcccgctggctaatcaaaagtctggagagtcgcaacgaaaccttg
ttaaaggtcactcgctgtatcgtcgagcagcaactggcattttttgaacagggcgaagag
tttatgaaacccatggtgctggcggatatcgcccaggctgtggatatgcatgagtccact
atttcccgcgtgactacgcagaaatttctgcatagcccacgaggtattttcgaactgaaa
tatttcttctccagccacgtgaatacagacagtggtggcgaagcgtcatccaccgctatt
cgggcgctggtcaagaaactgatcgctgcggaaaaccccgcgaagccattgagtgacagt
aaactaaccactttgctctctgaacagggaatcattgtggctcggagaactgttgcaaag
taccgagagtctctatctatcccgccgtcaaatcagcgtaagcagctggtctga
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