Prodigiosinella confusarubida ATCC 39006: CWC46_00815
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Entry
CWC46_00815 CDS
T05968
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serq03019
]
CWC46_00815
Messenger RNA biogenesis [BR:
serq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CWC46_00815
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AUG98493
UniProt:
A8YPB0
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All DBs
Position
complement(179649..181598)
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AA seq
649 aa
AA seq
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MGFTAKISMLITLLTTLAIFLMLSSGVFSFINYSHQRMEYQLRTLAASIDQALLVHSPDN
IQLWLPAVMKTAGVVELEIRDGHKRIYFQRLPETQVNDSGGPAFIYRYVQLPLLHHIDMS
VSVTYIDPLIGIPRYLMSMLSVLLAIAIMATAVFFSIRWLRRQTAGQEQLETRAKLILYG
ERETVMHGSVHEWPVNASGALDQLLADLVEAREERGRVDTLIRAFAAQDAETGLNNRLFF
DSQLTTQLEDAEDVGTHGVVMMIRLPDFETLEETHGYGGVIEEYRYTLINLLSTFVLRYP
SALLARYYHSDFAVLLPHRTLKEADTIAAQLVKAIDILPVTPLIEREDILHIGICAYHSG
QSAEQVMESAEDATRNAVLQGGNGWCVYDRQVPDKGRGSVKWRTLLEHTLSRGGPRLYQK
PAITREGEVHHRELISRIYDGSQELLAAEYMPLVRQLGLTASYDRQLITRSIALTVSWPE
AVLALPITVDSLLQRPFLHWLRETLLQCPKKQRQRIFFELAEADVCQYIGRLRPILSLIS
GLGCRLAVTQAGLTLVSTTYIKSLQIEIIKLHPGLVRSLEKRLENQLFVQSLTEACKGTH
VKVFAVGVRTKSEWQTLLDKGVCGGQGDFFASSEPVGNALKKYSSRAYV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgggatttactgcaaaaatttccatgctgataacattgctaacaacattggctattttc
ttaatgttgtcgagtggtgtttttagttttatcaattacagccaccagcgaatggagtac
caattacgtactctcgcggccagtattgaccaggctttactcgtgcactctcctgataac
atccagctttggctcccggcggtaatgaaaactgctggggttgttgagctggaaatacgt
gacgggcataagcgtatttattttcagcgattgccggaaacacaggttaatgatagtggc
ggaccggcatttatttatcgctatgttcaactgccgttgttgcatcatattgatatgtcg
gtgagcgtcacgtatatcgatccactgattggtatacctcgttatttgatgtcgatgctt
tctgttctattggctatcgccatcatggcgacggcggtatttttctctattcgctggctt
cgcaggcaaacggcaggtcaggaacagttggaaacacgggccaaacttatcctgtatggt
gagcgtgaaaccgtcatgcatggttctgtgcatgaatggccagtaaatgctagcggggcg
ttggatcaactcctggcggatttggtggaagcgcgggaggagcgtggacgggtggataca
ttgattcgcgctttcgcggcgcaggatgcggaaaccgggctcaataatcggctctttttt
gacagtcagctcactactcaactggaagatgcagaagatgtgggcacacatggcgtggtg
atgatgattcgtctgccagatttcgaaactctggaggagacgcatggttacggtggtgtc
attgaagaatatcgctatacattgattaacctgctttcaacatttgtactacgttatcct
tcggccttactagcgcgctattatcacagcgattttgccgtactgctaccacatcggacg
ttaaaagaagcggatacgattgctgctcaactggtgaaagcgattgatatcctgccggtg
acgccgttgattgagagagaagacattctgcatatcggcatctgtgcctatcatagcggc
cagagtgccgaacaggtcatggagagtgcagaagatgctacccgtaatgcggtattacaa
ggagggaatggctggtgtgtgtatgaccgccaggttccggataaaggccgtgggagcgtc
aagtggcgcacgctactggagcacacactgtcgcgtggcgggccgcgattatatcaaaaa
ccggctatcacgcgggaaggcgaagtgcatcatcgagaattaatcagccgtatttatgat
ggttcgcaagagctgttggcggcggaatacatgccgttggtacgacaactgggcttaacc
gccagttatgatcgtcaactgataacccgcagcattgcactgaccgtaagctggccggag
gctgtgctggcacttcccatcacagtggactcacttttacagcgtccatttttacattgg
ctgcgggaaacgttgctacaatgtccgaaaaagcaacgccaacgtattttctttgaactt
gcagaggcagatgtgtgtcaatatatcggccgtttacgtccgatactcagtctgatttcc
ggattggggtgtcggttggcggtaacgcaggccggtttgacgctggttagcacgacatac
attaaatcgctacagattgaaattatcaaattgcacccgggattggtgcgcagtctggaa
aaaagactggagaaccagctgtttgttcagagcttgaccgaggcttgtaaaggtactcac
gtcaaagtttttgccgttggcgttcgaaccaaatcggagtggcaaacgttgctggataaa
ggtgtttgtggtgggcagggagatttttttgcttcatctgagccggtcggtaacgcgctg
aaaaaatattcatctcgtgcttatgtttaa
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