Prodigiosinella confusarubida ATCC 39006: CWC46_02345
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Entry
CWC46_02345 CDS
T05968
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWC46_02345 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serq03021
]
CWC46_02345 (rpoC)
03400 DNA repair and recombination proteins [BR:
serq03400
]
CWC46_02345 (rpoC)
Enzymes [BR:
serq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWC46_02345 (rpoC)
Transcription machinery [BR:
serq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWC46_02345 (rpoC)
DNA repair and recombination proteins [BR:
serq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWC46_02345 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AUG98763
UniProt:
A0A2I5TEU4
LinkDB
All DBs
Position
complement(509129..513352)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKGMDLEQECEQLREELNETNSETKRKKLTKRVKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESIHRTSIIDTTVGRAILWMIVPQGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGVSVGIDDMVIPEKKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
FNAKFVMNNVGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDSADVVGGETVANW
DPHTMPVITEVSGNIRFTDMIDTQTITRQTDELTGLSSIVILDSAERTGGGKELRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPIDGSEPYEEMIPKWRQLNVFE
GELVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKCTIASSGSSEFLEGEQAEISRVKIANRQLEANGKISATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERMRRRQVVDTPV
TPQVSAEEATANLAELLNAGLGNNDDK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccagagactattaactatcgtacgttcaaacctgaacgtgatggccttttctgtgctcgt
atctttgggccagtaaaagattacgagtgcttgtgcggtaagtacaagcgcttgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgaa
cgtatgggacacatcgaactggcttctccgacggcacacatctggttcctgaaatcgttg
ccatcccgcatcggtttattactggatatgccgctgcgtgatatcgaacgcgtactgtac
tttgaatcctatgtagtggttgaaggcggtatgaccaacctggagcgccgacagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgagttcgatgccaaaatg
ggtgccgaagctattcaggccttgttgaaaggcatggatctggagcaagaatgcgaacag
ctgcgtgaagagttgaatgaaaccaactctgaaaccaaacgtaaaaagctgaccaagcgc
gtcaagttgctggaagccttcatacagtctggtaacaaaccagagtggatgattttgacc
gttctgcccgtattgccgccggatctgcgtccgctggtaccactggatggcggccgtttt
gcgacttctgatctgaacgatctgtatcgtcgagtgataaaccgtaacaaccgtttgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaatgaaaaacgtatgttgcag
gaagcggtcgatgcattgctggataatggtcggcgcggtcgtgcgatcactggttccaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggacgtttccgtcag
aacctgctgggtaaacgcgtggactactccggtcgttccgttattaccgtgggtccgtac
ctgcgcctgcatcaatgcggcctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtctggctaccaccattaaagcagccaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcctcgacgaagtgattcgcgaacacccg
gtactgctgaaccgtgcgccaaccctgcaccgtttgggtattcaggcgtttgaaccagta
cttatcgaaggtaaagccatccagctgcatccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcatgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtccaccaacaacattctgtcaccggcgaatggtgagccaatcatc
gttccttcccaggacgtggtgttgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgttgacggggccgaaagaagctgagcgtatttatcgcgccggt
ctggcttccttgcatgcgcgtgtcaaagtgcgtatcaccgaagagatcaggaataccgaa
ggcgagtcgatacaccggacgtctattatcgatacaactgtaggccgtgcgatcctgtgg
atgatcgttcctcaaggtctgccgttctctatcgttaaccagccgttaggtaaaaaagct
atctctaaaatgctgaacacctgttatcgcattttgggcctgaagccgacggttatcttc
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggtgtatccgtaggt
attgatgatatggtgatcccagagaagaaagcggggattatcgaagaagcagaaaccgaa
gttgcagagatccaggaacagttccagtctggtctggtaactgctggtgaacgttacaac
aaggttatcgatatctgggctgcggcaaacgaacgcgttgccaaggcgatgatggaaaac
ctgtctgttgaagatgtggttaatcgtgatggcgaagttgagcaacaggtttcttttaac
agtatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacacctattacc
gcaaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggatacggcactgaaaaccgcaaactccggttatctgactcgccgtttg
gttgatgtggcgcaggatctggtagtcactgaagatgattgtggtactcacgaaggtatc
atgatgaccccggttattgagggcggtgacgttaaagagccgttgcgtgagcgtgtgctt
ggtcgtgtgacggctgaagacgttatcaaaccgggtacagctgatattctggttccacgt
aatacgttgctgaacgagaaatggtgtgacctgctggaagaaaactctgtcgatgcggtt
aaagtccgttctgtcgtaagttgcgaaactgactttggcgtttgtgccaagtgttatgga
cgtgacttggcgcgtgggcacatcatcaacaagggtgaagcagtcggggttatcgcggca
cagtctatcggtgaaccaggtactcagctgaccatgcgtacgttccacatcggtggtgca
gcgtctcgtgcggcagctgaatccagtattcaggtgaaaaacaaaggtagcctgaaattg
tttaacgcgaagttcgttatgaacaacgtgggtaaactggtgattacatcgcgtaatacc
gaattgaagctgattgatgaattcggtcgcaccaaagaaagctataaagtgccttatggt
gcggtcatggcgaagggcgatagtgctgatgttgtcggtggcgaaactgttgctaattgg
gatccgcataccatgccggttatcactgaagtgagcggtaacattcgcttcactgatatg
atcgacacccagaccatcactcgtcaaactgacgaactgactgggttgtcctctatcgtg
atactggatagtgcggaacgtaccggtggtggtaaagaactacgcccggcgttgaaaatt
gtagatgccaatggcaatgatgtattgattccgggtacggatatgcctgctcaatacttc
ttgccgggtaaagccattgtccagttggaagatggtgtacaaatcaatgcaggtgacaca
ctggcacgtatcccgcaggaatccggcggtaccaaggatattaccggtggtttgccacgt
gttgcggatctgttcgaagcccgtcgtccgaaagaaccggctattctggccgaaatcagc
ggtgtcgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggtgattacaccaata
gatggcagtgaaccgtatgaagagatgattccgaagtggcgtcagctcaacgtgtttgaa
ggtgaactcgtagaacgcggtgatgttatctccgatggcccggaatctccgcatgatatt
ttgcgtctgcgtggtgtccatgctgttacgcgctatatcaccaacgaggttcaggacgtt
taccgtctgcaaggtgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaatgtaccatcgcgagttcaggtagctcggagttcttggaaggcgaacaggcg
gaaatttcccgcgttaagatcgccaaccgccaattggaagcaaacggcaagatctcggca
acgtatgcccgagatttgctgggtatcaccaaagcttctctggctaccgagtccttcatc
tctgcggcatcattccaggaaaccactcgtgtgcttactgaagctgcggttgcgggtaaa
cgtgatgagctgcgcggtttgaaagaaaacgtgatcgtgggccgtttgatcccggctggg
actggttattcgtaccaccaggagcgtatgcgccgtcgtcaggtggttgataccccggtt
acgcctcaggttagcgctgaagaagctacggccaatttggcagagttgttgaatgctggt
ctgggtaacaacgacgacaagtaa
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integrated database retrieval system
