Prodigiosinella confusarubida ATCC 39006: CWC46_02350
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Entry
CWC46_02350 CDS
T05968
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWC46_02350 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serq03021
]
CWC46_02350 (rpoB)
03400 DNA repair and recombination proteins [BR:
serq03400
]
CWC46_02350 (rpoB)
Enzymes [BR:
serq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWC46_02350 (rpoB)
Transcription machinery [BR:
serq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWC46_02350 (rpoB)
DNA repair and recombination proteins [BR:
serq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWC46_02350 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AUG98764
UniProt:
A0A2I5TEV2
LinkDB
All DBs
Position
complement(513446..517474)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILNLFFDKVAYEIDNNKLQME
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRLLEKDGIERIEVPVEYIAGKVLAKD
YIDVGTGEVIAMANMELSLDLLAKLSQAGHKHIETLFTNDLDHGPYMSETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDDVVT
DEIHYLSAIEEGNYVIAQANTNLDEEGHFIDELVTCRNKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHYVLVAGGIEAEKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQEEVSK
LREFIQKAYDLGNDVRQKVDLTTFTDEEVLRLAENLKKGMPIATPVFDGAKESEIKELLK
LGDLPTSGQITLFDGRTGEQFERSVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcaa
gtgttggacataccttatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggtcagtacggattggaagcagcattccgttctgttttcccaattaag
agttacagcggtaattcagagctgcaatacgttagctatcgcttgggcgagccggtgttt
gacgttaaagagtgtcaaatccgtggtgtaacgttttctgcaccgctgcgtgtgaagttg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagatattaaagaacaa
gaagtttacatgggcgaaattccgctcatgacagaaaacggcacctttgtcattaacggt
actgagcgcgttatcgtatctcagttgcaccgtagtccaggtgtgttctttgacagcgac
aagggtaaaacccactcttccggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggattttgaattcgacccgaaagacaatctgtttgtccgtatcgaccgt
cgccgtaaattacctgcgaccatcattctgcgtgcattgagttactctaccgaagaaatt
ctgaatttgttcttcgacaaagtagcctatgaaatcgacaacaataagttgcagatggaa
ctggtgccagagcgcttacgtggcgaaactgcttcttttgatattgaagcgaatggcaag
gtctacattgaaaaaggccgtcgtatcacggctcgccatatccgtctgttagaaaaagat
ggcattgagcgtattgaagtaccggtggaatacattgccggtaaagtattggctaaagat
tatattgatgtcggcacgggtgaagtgatcgcgatggcgaacatggaactgtcgctggat
ttgctggctaaactgagccaggcaggccacaaacatatcgaaacgctgtttaccaatgat
cttgatcatggtccgtatatgtctgagacgctgcgtgtcgacccaaccagtgatcgtctg
agtgcattggttgaaatttaccgcatgatgcgtccgggtgagccaccgacacgtgaagcg
gctgaaacgctgtttgaaaacctgttcttctctgaagatcgttatgatctgtcggcggtt
ggtcgtatgaagttcaaccgttctttgctgcgtgaggagatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggt
gaggtggatgatatcgaccacctgggtaaccgtcgtatccgttctgttggtgaaatggct
gaaaaccagttccgtgtgggtctggtgcgtgttgagcgtgcggtgaaagaacgcctgtca
ttgggcgatctggacacattaatgccgcaggatatgatcaatgccaagccgatttctgct
gcagtaaaagagttcttcggttccagtcagttgtctcaatttatggatcagaacaaccca
ctgtctgaaattacgcataagcgtcgtatttctgctctgggccctggcggtctgacccgt
gaacgtgcgggctttgaagttcgagacgtacatccgacacactatggtcgtgtatgtcct
atcgagacacctgaaggtcctaacatcggtctgattaactcgttgtctgtatatgcacag
actaacgaatatggtttcctggaaaccccgtatcgtcgtgttcgtgatgatgtggtgaca
gatgaaattcattacctgtccgcgattgaagaaggcaattacgttattgcccaggcgaac
accaatctggacgaagaaggccatttcatagatgaattggttacttgtcgtaacaaaggc
gaatccagcctgtttagccgcgatcaagttgactatatggacgtttccacccagcaggtg
gtttctgtcggtgcatcactgattccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggtaccgactctgcgtgctgataagccgctggta
ggcactggcatggagcgtgcggtagcggtggactcgggtgtaacttccgttgccaaacgt
ggtggtaccgttcagtacgtagatgcttcccgtatcgtgatcaaggttaacgaagatgaa
atgtatccgggcgaagccggcattgatatctataacctgaccaaatatacccgttccaac
cagaacacttgtatcaaccagatgccttgcgtatcactgggtgagccggttgaacgcggt
gatgtgttggctgacggcccgtctaccgacctgggtgaattggctctgggtcaaaacatg
cgcgtggcgttcatgccgtggaatggttacaacttcgaagactccattctcgtatccgag
cgtgtagtacaggaagatcgtttcacgactatccatattcaggaactggcatgtgtatcc
cgtgataccaagttagggcctgaagagattactgcggatatcccgaatgtgggtgaagca
gcgctctccaaactggatgagtccggcattgtctatatcggtgctgaagtgaccggtggt
gatattctggtgggtaaagtaacgccgaaaggcgaaactcaactgacgccggaagagaag
ctgctgcgagccatctttggtgaaaaagcgtctgacgttaaagattcgtcactgcgtgtg
ccaaacggtgtttccggtacggttatcgatgttcaggtctttacccgcgatggtgtggaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagttgaagcaggccaaaaaagacctg
acggaagagctgcagattctggaagccggcctgtttgcccgtattcactacgtgctggtt
gccggtggcattgaagctgagaagttggacaaactgccgcgtgagcgttggctggaactg
ggtttgactgatgaagagaagcaaaatcagttagaacagctggcggagcagtatgacgaa
ttgaagcacgagttcgagaaaaaactcgaagctaaacgtcgcaagatcactcaaggtgat
gatctggccccgggtgtactgaagatcgttaaggtgtacttggcggttaaacgtcagatt
cagccaggcgacaagatggctggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagatattgtactcaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaacccatttgggtatggct
gcgaaaggtattggtgacaagattaatgccatgctgaagcagcaggaagaagtatccaaa
ttgcgtgaattcatccagaaagcctatgatttgggtaatgacgttcgccagaaagttgac
ttgaccacctttaccgatgaagaagtgctgaggctggcggaaaacctgaaaaaaggtatg
cctatcgccacaccggtatttgacggtgccaaagaaagcgagattaaagaattgctgaaa
ctgggtgatctgccgacttccggtcagattacgttgttcgatggtcgaactggtgagcaa
ttcgagcgctcggttactgtgggctacatgtacatgctgaaactgaaccatttggtggat
gacaagatgcatgcccgttctaccggctcttatagtctggttactcagcagccgttgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggtgcagcctatactctgcaggaaatgctgacggtgaaatctgatgacgtgaatggc
cgcaccaagatgtataaaaacatcgtggatggtgatcaccggatggaaccaggcatgccg
gagtccttcaatgtgttgttgaaagaaatccgttcgctgggtatcaacatcgagctggaa
gaagattaa
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